PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10940
Common NameKK1_011262
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 189aa    MW: 21932.4 Da    PI: 5.0071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10940genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.61e-131391856
                   HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +Fe+++ +  +++ + Ak+lgL+ rqV +WFqN+Ra++k
  C.cajan_10940  1 MFERDSRLEPSKKLQVAKELGLQPRQVAIWFQNKRARWK 39
                   69999*********************************9 PP
2HD-ZIP_I/II93.91.8e-301771793
    HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                   +Fe++++Lep++K ++a+eLglqprqva+WFqn+RAR+k+k+l +dy+ L+++y++l+++ + L+ke+++L  +l+e
  C.cajan_10940  1 MFERDSRLEPSKKLQVAKELGLQPRQVAIWFQNKRARWKSKKLQRDYTILRANYNSLASHFDLLNKEHQALLIQLQE 77
                   6999*******************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.252141IPR001356Homeobox domain
PfamPF000464.5E-11139IPR001356Homeobox domain
SMARTSM003890.002145IPR001356Homeobox domain
SuperFamilySSF466895.01E-12153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-14247IPR009057Homeodomain-like
CDDcd000861.48E-10242No hitNo description
PRINTSPR000312.5E-51221IPR000047Helix-turn-helix motif
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PRINTSPR000312.5E-52137IPR000047Helix-turn-helix motif
PfamPF021834.4E-124181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MFERDSRLEP SKKLQVAKEL GLQPRQVAIW FQNKRARWKS KKLQRDYTIL RANYNSLASH  60
FDLLNKEHQA LLIQLQELND EIHKSLEHAE SCTTGKKMES ERENGDMMKS EQEVKQSKRS  120
EDNIVGSVNV LSEDDSGIKA EQHFGVEDEP AAVNVVHHAI AAEDWCVFDY DDILGQSTSS  180
DYQWWDFYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543ARWKSKKLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150385e-50AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213459.11e-140homeobox-leucine zipper protein ATHB-12
TrEMBLA0A151TY301e-138A0A151TY30_CAJCA; Homeobox-leucine zipper protein ATHB-12
STRINGXP_007147343.12e-75(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.13e-40homeobox 12