PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05317

Common Name

KK1_005449

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YC

Protein Properties

Length: 176aa MW: 20146.8 Da PI: 4.4713

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05317	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	129.1	1.5e-40	41	142	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++ w++ ie++tdf+ h+lPl +i ki+k d dv+m+saeaPvl++kacel+i elt+++w++a+++kr ++k+di+aa+t+td fdfl C.cajan_05317 41 QLNNCWARLcqeIEETTDFNTHSLPLDKIEKIMKDDGDVHMVSAEAPVLFAKACELLIHELTMKAWVNADKSKRDLIQKCDIEAAITNTDEFDFLA 136 577778653334********************************************************************************** PP NF-YC 94 divprd 99 d+vp + C.cajan_05317 137 DVVPIE 142 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.42E-26	53	143	IPR009072	Histone-fold
Pfam	PF00808	9.1E-16	63	126	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.4E-29	64	140	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MEATNPPPQA TNTCIPPPYP IQQQYAPHYM YDPQEDHLQH QLNNCWARLC QEIEETTDFN 60 THSLPLDKIE KIMKDDGDVH MVSAEAPVLF AKACELLIHE LTMKAWVNAD KSKRDLIQKC 120 DIEAAITNTD EFDFLADVVP IEHVGISRRD IDPTQIVPYY YMPPHQHVIG PPFDAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-35	51	140	5	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05317

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020210477.1	1e-130	nuclear transcription factor Y subunit C-2
Swissprot	Q655V5	1e-40	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A151U0K8	1e-128	A0A151U0K8_CAJCA; Nuclear transcription factor Y subunit C-2
STRING	GLYMA08G15700.1	3e-53	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1257	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-41	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]