PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02296
Common NameKK1_002353
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 990aa    MW: 110216 Da    PI: 6.4556
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02296genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40133210178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +Cqve+C+adls+ak+yhrrhkvCe+hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  C.cajan_02296 133 VCQVEDCSADLSKAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNH 210
                    6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-33127195IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.171131208IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-38132213IPR004333Transcription factor, SBP-box
PfamPF031102.0E-29134207IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.9E-7731878IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.31E-8758876IPR020683Ankyrin repeat-containing domain
CDDcd002041.61E-6764875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MEARFGAEAY HFYGVGASSD LRGLGKRSSE WDLNDWRWDG DLFIASRLNP VPADGVGVGQ  60
HFFPLGDPKG NKEGDKKRRV IVLEDDGLNE EAGTLSLKLG GHASTVVDRE VASWDGMNGK  120
KSRVSGSTSS RAVCQVEDCS ADLSKAKDYH RRHKVCEMHS KASKALVGNA MQRFCQQCSR  180
FHLLQEFDEG KRSCRRRLAG HNKRRRKTNH EVVPNGNSLN DDQTSSYLLI SLLKILSNMH  240
SDRSDQTTDQ DLLTHILRSL ASQNGEQGSK NISNLLREPE NLLREGGSSR KSEMVSTLFS  300
NGSQGSPTDT RKHETVSVAT MQQQMHAHDA RAADQHVMSS IKPSVSDSPP AYSEARDSTA  360
GQIKMNNFDL NDIYIDSDDG MEDLERLPVS TNLVTGSLDY PWTQQDSHQS SPPQTNGNSD  420
SASAQSPSSS SGEAQSRTDR IVFKLFGKEP NDFPLVLRAQ ILDWLSHSPT DMESYIRPGC  480
IVLTIYLRQA EALWEELCYD LTSSLSRLLD VSDDTFWRNG WVHIRVQHQM AFIFNGQVVI  540
DTSLPFRSHS YSKILTVSPI AVPASKKAQF SVKGVNLIRP ATRLMCALEG KYLPCEDADV  600
PMDQYSKESD ELQCIQFSCS VPVMNGRGFI EIEDQGLSSS FFPFIVVEED VCSEICALEP  660
LLELSETDPN IEGTGKIKAK NQAMDFIHEM GWLLHRSQMK LRMVQLNSSV DLFSLKRFKW  720
LIEFSIDHDW CAVVKKLLNL LLDGTVNTGD HPSLYIALSE MGLLHKAVRR NSKQLVELLL  780
RYVPENISYE LGPEGKALID GDNQTFLFRP DVVGPAGLTP LHIAAGKDDS EDVLDALTND  840
PCTVGIAAWK NARDSTGSTP EDYARLRGHY GYIHLVQKKI NKRQGATHVV VEIPSNTTEN  900
NTNQKQNESS TSFEIGKAEV RLSQRHCKVC DTKSSCRTAV GRSLVYRPAM LSMVAIAAVC  960
VCVALLFKSS PEVICMFRPF RWETLDFGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31125207384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228850.10.0squamosa promoter-binding-like protein 1
RefseqXP_020228851.10.0squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A151SMZ00.0A0A151SMZ0_CAJCA; Squamosa promoter-binding-like protein 12
STRINGGLYMA10G01211.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]