PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_006850_gcqz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 263aa    MW: 29625 Da    PI: 5.0692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_006850_gcqz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2092142256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f ++eeAa+a++ a+kk++ge
  Bv_006850_gcqz.t1  92 VYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDTAAKKIRGE 142
                        69*******.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-3892155IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2392151IPR016177DNA-binding domain
PROSITE profilePS5103224.56692149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3292151IPR001471AP2/ERF domain
PfamPF008472.8E-1492142IPR001471AP2/ERF domain
PRINTSPR003679.0E-1493104IPR001471AP2/ERF domain
CDDcd000186.62E-3293148No hitNo description
PRINTSPR003679.0E-14131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MCGGAIISDL IAAKRGRNLS TQDLWSELDA DLLSSHSLSS SPKSNSTSLF SHQTTLTPQL  60
GWAVDGVKSK ENEHVVEEVP KPSQTRKTRK NVYRGIRRRP WGKWAAEIRD PRKGVRVWLG  120
TFNSPEEAAR AYDTAAKKIR GEKAKLNFPD SPPQPPPESP LDELSPRSAK RPCMSYSTES  180
TQLAMPTMSM RSWGSDDNVN NPEEDFVIEM QNEINQQISE LESFLGLDHE PSELTESDTA  240
SLGWVMDEFS FVNYDMHNNN YMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-22931491572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18599RKTRKNVYRGIRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667125.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0J8B3N90.0A0A0J8B3N9_BETVU; Uncharacterized protein
STRINGXP_010667125.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-50ethylene-responsive element binding protein