PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_006040_unrk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LFY
Protein Properties Length: 504aa    MW: 55556.2 Da    PI: 6.9617
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_006040_unrk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY598.81.2e-18214841385
            FLO_LFY   1 mdpeafsaslfkwd.praaa..aapparlleeaavseap.........leaaaaaaarklr............................... 49 
                        md+++f+aslfkwd pr+    +app+  + +a+ ++ p         +           r                               
  Bv_006040_unrk.t1   1 MDQDQFTASLFKWDyPRSSLasSAPPQPSTAQASSATLPpylargllgI-----------Rdpvgipgvgmgmgmgmgmgmgmsmqgiamgi 81 
                        9*************97776633344444444443333332333333330...........33444566666677777788888888999999 PP

            FLO_LFY  50 .....................eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrl 120
                                             +leelf+ayG+ry+t++kiae+GftvstLvdmk+ee+d++m+sls+ifr+dllvGeryGikaa+raerrrl
  Bv_006040_unrk.t1  82 pgnaatagtgtgaggssgysgGLEELFQAYGIRYYTAVKIAEMGFTVSTLVDMKEEEVDEMMNSLSHIFRWDLLVGERYGIKAAIRAERRRL 173
                        ******************************************************************************************** PP

            FLO_LFY 121 eeeeaekkrrk....ll.......sedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkel 201
                        ee e+++++r+     +        + +++ ldalsqeglsee   +eke +gsgg++ + + +  ++++++++   ++ +kk++++++ ++
  Bv_006040_unrk.t1 174 EELEESRRHRHhhnnNMsysntppPDSTHHPLDALSQEGLSEEGGLHEKEVVGSGGGNWEMMVTCPTNQHTNQD---DQLRKKHRKHEHLQA 262
                        **88888877745551155566634445559***********************99984444444444333222...222222222222222 PP

            FLO_LFY 202 kse.................................ededeeeeededeeg.......sgedgeerqrehPfivtepgevargkknGLDYLf 253
                        +++                                 +  + eeee +d+e+       +g++g erqrehPfivtepgevargkknGLDYLf
  Bv_006040_unrk.t1 263 RKTvhnmmnisaahikvgqesgriignhnnsnsnidD--EMEEEEVDDDEEvgrgggiGGSGGAERQREHPFIVTEPGEVARGKKNGLDYLF 352
                        222344677899****************999988541..3333333333334566676788889**************************** PP

            FLO_LFY 254 dLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplv 345
                        +LyeqCr+fL qvq+iakerGekcPtkvtnqvfr+akkaga+yinkPkmrhYvhCYalhcLdee+snalrrafkergenvGawrqacykplv
  Bv_006040_unrk.t1 353 HLYEQCRDFLQQVQNIAKERGEKCPTKVTNQVFRFAKKAGATYINKPKMRHYVHCYALHCLDEETSNALRRAFKERGENVGAWRQACYKPLV 444
                        ******************************************************************************************** PP

            FLO_LFY 346 aiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
                        +iaarqgwdida+fn+hprLsiWYvPtkLrqLCh+ers++
  Bv_006040_unrk.t1 445 TIAARQGWDIDAIFNSHPRLSIWYVPTKLRQLCHAERSSS 484
                        *************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016986.3E-172101484IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDQDQFTASL FKWDYPRSSL ASSAPPQPST AQASSATLPP YLARGLLGIR DPVGIPGVGM  60
GMGMGMGMGM GMSMQGIAMG IPGNAATAGT GTGAGGSSGY SGGLEELFQA YGIRYYTAVK  120
IAEMGFTVST LVDMKEEEVD EMMNSLSHIF RWDLLVGERY GIKAAIRAER RRLEELEESR  180
RHRHHHNNNM SYSNTPPPDS THHPLDALSQ EGLSEEGGLH EKEVVGSGGG NWEMMVTCPT  240
NQHTNQDDQL RKKHRKHEHL QARKTVHNMM NISAAHIKVG QESGRIIGNH NNSNSNIDDE  300
MEEEEVDDDE EVGRGGGIGG SGGAERQREH PFIVTEPGEV ARGKKNGLDY LFHLYEQCRD  360
FLQQVQNIAK ERGEKCPTKV TNQVFRFAKK AGATYINKPK MRHYVHCYAL HCLDEETSNA  420
LRRAFKERGE NVGAWRQACY KPLVTIAARQ GWDIDAIFNS HPRLSIWYVP TKLRQLCHAE  480
RSSSNTGGSI SAAAASGGPH HLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1083234982189PROTEIN LEAFY
2vy2_A1e-1083234982189PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667025.10.0PREDICTED: leafy/floricaula homolog FL1
SwissprotO040641e-162FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A0J8B3F40.0A0A0J8B3F4_BETVU; Uncharacterized protein
STRINGXP_010667025.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-104floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]