PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003330_fefj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 233aa    MW: 26728.1 Da    PI: 6.6342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003330_fefj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-1994143255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W++eIrdp     +  +r++lg+f tae+Aa+ +++a+ +++g
  Bv_003330_fefj.t1  94 KYRGVRQRP-WGKWASEIRDP-----HraARVWLGTFETAEDAAREYDRAAVRFRG 143
                        8********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.21E-2194152IPR016177DNA-binding domain
PROSITE profilePS5103223.51294151IPR001471AP2/ERF domain
PfamPF008471.3E-1194143IPR001471AP2/ERF domain
SMARTSM003804.2E-3494157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3194151IPR001471AP2/ERF domain
CDDcd000183.63E-3294150No hitNo description
PRINTSPR003672.2E-1195106IPR001471AP2/ERF domain
PRINTSPR003672.2E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDASGNWQLL NPEQEMNIMV SALQHVISGG SNNQRPPDDG SHLVTQTLQH NQVSTTWSPP  60
SFATSESPPT NSQIESSNSS NNVGKQRKRY SRNKYRGVRQ RPWGKWASEI RDPHRAARVW  120
LGTFETAEDA AREYDRAAVR FRGPRAKLNF CLSDYLPQLE EYNNFHNHYR NKQQTINQTN  180
NNNNNNNNVI GTNQVPETSD FVQITDSEEL EHWVNGLIDD IPSWDIPYGI SRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2495152361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666622.11e-174PREDICTED: ethylene-responsive transcription factor ERF098
TrEMBLA0A0J8B8511e-173A0A0J8B851_BETVU; Uncharacterized protein
STRINGXP_010666622.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-26redox responsive transcription factor 1