PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_000470_dyzk.t2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 35937.4 Da PI: 7.2336 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.9 | 1.2e-50 | 11 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+d+elv++yL +k +g + l + evd++k+ePwd+p++v + kewyf+ +rd+kyatg r+nrat+sgyWkatgkd++v Bv_000470_dyzk.t2 11 LPPGFRFHPRDDELVCDYLMNKWNGCESAL---LIEVDLNKCEPWDIPACV--GGKEWYFYNQRDRKYATGLRTNRATASGYWKATGKDRPV 97 79***********************99655...789************776..779************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+lvg++ktLvfy+grapkg+ktdWvmhe+r+ Bv_000470_dyzk.t2 98 IR-RGSLVGMRKTLVFYQGRAPKGKKTDWVMHEFRV 132 *9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-56 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.309 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 12 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MSSLTMVEAK LPPGFRFHPR DDELVCDYLM NKWNGCESAL LIEVDLNKCE PWDIPACVGG 60 KEWYFYNQRD RKYATGLRTN RATASGYWKA TGKDRPVIRR GSLVGMRKTL VFYQGRAPKG 120 KKTDWVMHEF RVEGLFAPPK YNSTSKQEDW VLCRVFYKSR EVGSKTDAEN DVNPLDETSS 180 SSLPPLMDSY ITFDQTQSNI VDAYQQVPCF SISSSANQNH AEPLLYAQNF NVHPNNVTKN 240 HQTSTNTFGS TMMLDDAPAH NLSPISCDRK VLEAVLTHLT KMETSPNING SRSLGQVASS 300 SESYLSDVAL PPHMWNHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-50 | 6 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-50 | 6 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-50 | 6 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-50 | 6 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-50 | 6 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-50 | 6 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-50 | 6 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-50 | 6 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-50 | 6 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-50 | 6 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-50 | 6 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-50 | 6 | 158 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-50 | 6 | 158 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-50 | 6 | 158 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010666182.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 isoform X3 | ||||
Swissprot | Q84TE6 | 1e-108 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0J8B4Y1 | 0.0 | A0A0J8B4Y1_BETVU; Uncharacterized protein | ||||
STRING | XP_010666180.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-110 | NAC domain containing protein 1 |