PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_199170_kush.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HSF

Protein Properties

Length: 337aa MW: 38567.8 Da PI: 8.0746

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_199170_kush.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.5	3.1e-31	49	139	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k++ei+ed+e+++++sw + +sf+v+d ++f++ +L+kyFkh+nf+SFvRQLn+YgF+kv+ ++ e++++ F+kgkk+ Bv8_199170_kush.t1 49 FLSKTFEIVEDPETDTIVSWGVTFDSFIVWDISKFSD-LLSKYFKHRNFNSFVRQLNTYGFRKVHLDR---------LEYANSGFQKGKKH 129 9******************999*********.***********************999.........78******** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++ikr+++ Bv8_199170_kush.t1 130 LLKTIKRRNH 139 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	9.39E-27	45	137	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.1E-31	45	137	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-46	45	137	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-16	49	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.7E-26	49	137	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-16	86	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	87	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-16	99	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEPKTELSLG GGIRSSGFVT TKMEDTEEKE VIELPKPLEN LHEIGPPPFL SKTFEIVEDP 60 ETDTIVSWGV TFDSFIVWDI SKFSDLLSKY FKHRNFNSFV RQLNTYGFRK VHLDRLEYAN 120 SGFQKGKKHL LKTIKRRNHG ANNNTALLLQ RETAIENIKK EQEALKLEIL DLKKEQQNSN 180 TCLAALGERV KFVEWKQREF IMLIAKAMKR TSSFQQVLQN YRHNKVLSSG EFYKKRRLAS 240 TSDSLALADQ FLANSPTTTQ NKEDVSTFQY EANSFVGSAG QKSNLASETS SPDLSSGSYI 300 MWEKLMADDV ICKDDREEKY VHELENLITK PSSLICK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-20	47	137	27	129	Heat shock factor protein 1
5d5v_B	5e-20	47	137	27	129	Heat shock factor protein 1
5d5v_D	5e-20	47	137	27	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	LKTIKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ851167	0.0	DQ851167.1 Beta vulgaris BAC SBA091H24 hypothetical protein, putative integrase, hypothetical protein, putative non-inducible immunity 1 (NIM1), and putative heat shock factor genes, complete cds.
GenBank	EF101866	0.0	EF101866.1 Beta vulgaris RNA-directed DNA polymerase gene, partial cds; and heat stress transcription factor HSF, NPR1 (NPR1), hypothetical protein, integrase, hypothetical protein, retrotransposon proteins, hypothetical proteins, polynuclyotidyl transferase, transposon-like protein, integrase, calmodulin-binding protein (CAM), reverse transcriptase, and casein kinase (CK1) genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696526.1	0.0	PREDICTED: heat stress transcription factor A-7a
Refseq	XP_010696527.1	0.0	PREDICTED: heat stress transcription factor A-7a
TrEMBL	Q0PEL3	0.0	Q0PEL3_BETVU; Heat stress transcription factor HSF
STRING	XP_010696526.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	7e-58	heat shock transcription factor A2

Publications ? help Back to Top
Kuykendall D,Shao J,Trimmer K A Nest of LTR Retrotransposons Adjacent the Disease Resistance-Priming Gene NPR1 in Beta vulgaris L. U.S. Hybrid H20. Int J Plant Genomics, 2009. 2009: p. 576742 [PMID:19390694]