PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv8_194420_hkxp.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 24463.7 Da PI: 7.9846 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 6 | 54 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr++ +g Wv+eIr+p kr++lg+f+tae Aaka+++a+ + Bv8_194420_hkxp.t1 6 KYRGVRQRQ-WGTWVSEIRHP-----LlkKRVWLGTFDTAEAAAKAYDQAAIIMC 54 8*****999.**********8.....335*********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.06E-24 | 5 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 6 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-11 | 6 | 54 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-21 | 6 | 65 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.9E-38 | 6 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.128 | 6 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVPYQKYRGV RQRQWGTWVS EIRHPLLKKR VWLGTFDTAE AAAKAYDQAA IIMCGRNAKT 60 NFPPSQEIGG QKGLNNLASS SPTTHESLSQ ALHTKLCKSN EVPSSSLTCL RLDIENSHIG 120 VWQNRIGPSP SSKWVKIVKF AKNKDVEVDI DQEESINKEQ EKQEKRIENM PIPLPSTNGA 180 FGGIYDQGHH LSMDEEERVA LQMIEELLSR NYCSTTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 6 | 69 | 14 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010687993.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0A0LKZ7 | 2e-65 | A0A0A0LKZ7_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A2P5WDY4 | 2e-65 | A0A2P5WDY4_GOSBA; Uncharacterized protein | ||||
STRING | XP_010687993.1 | 1e-163 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 8e-47 | ERF family protein |