PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_165030_ywhu.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

ARR-B

Protein Properties

Length: 329aa MW: 38258.6 Da PI: 6.3186

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_165030_ywhu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84	1.5e-26	197	250	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wtp+LH++F+ea++qL G+ek +Pk+ile+m+v+ Lt+e+v+SHLQkYR Bv7_165030_ywhu.t1 197 KQRVVWTPQLHAKFMEAIKQL-GTEKPVPKKILEIMNVPELTRENVASHLQKYRQ 250 79*****************.9*****************************6 PP
2	Response_reg	60.3	1e-20	14	120	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 +livd +++ + l+++l+ ++ +v+ ++ ++ea+++l+e + +Dl+++D+ + +m+G+ellk i e +lp+i+ + ++++ + + Bv7_165030_ywhu.t1 14 ILIVDYDNNSLLRLEEMLQYCRF-KVTKCRYAKEAIRILEEDRnhYDLVIVDVYLTEMNGFELLKLIGIET-NLPVIMTSIDDDNDQIRKG 102 89*******************.***********888888******************7766.8************** PP HHTTESEEEESS--HHHH CS Response_reg 90 lkaGakdflsKpfdpeel 107 + +Ga+d+l Kp+++e++ Bv7_165030_ywhu.t1 103 MLYGASDYLIKPIQMENV 120 ***********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	1.85E-25	11	135	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	3.6E-28	12	135	No hit	No description
SMART	SM00448	2.3E-17	12	124	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	32.401	13	128	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	6.0E-18	14	120	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	3.60E-20	15	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-27	194	255	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.55E-19	194	254	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.151	194	253	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-24	197	250	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-8	199	249	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAQVGSFVER EWKILIVDYD NNSLLRLEEM LQYCRFKVTK CRYAKEAIRI LEEDRNHYDL 60 VIVDVYLTEM NGFELLKLIG IETNLPVIMT SIDDDNDQIR KGMLYGASDY LIKPIQMENV 120 RYLWKYVYGK QRHEELIKAR VAQSGSNSSD IINMNYYCKR VSKNAWIAPI SDHGKRKIAD 180 INGDQQMNDD ATTTKKKQRV VWTPQLHAKF MEAIKQLGTE KPVPKKILEI MNVPELTREN 240 VASHLQKYRQ YHKRMEQTLQ YQSENLPPIS SDEDIHTSSC SLQLQEGQIS GFGDVSCTRV 300 DDDTYASYIL DHCYNDPALY SQLFGNQSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	3e-19	193	255	1	63	ARR10-B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106155.1	1e-163	PREDICTED: two-component response regulator ORR26-like
TrEMBL	A0A0J8BXK7	0.0	A0A0J8BXK7_BETVU; Uncharacterized protein
STRING	XP_010684613.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	6e-62	response regulator 2