PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_148380_saoc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 389aa    MW: 44491.5 Da    PI: 6.6418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_148380_saoc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-1853104156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         ++y+GVr+++ +gr++AeIrdp     +  r +lg+++taeeAa a++ a+++++g+
  Bv6_148380_saoc.t1  53 TRYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTYDTAEEAACAYDYAARAMRGN 104
                         68********.**********93....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1153103IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2154112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-2954111IPR001471AP2/ERF domain
SMARTSM003803.0E-3454117IPR001471AP2/ERF domain
PROSITE profilePS5103222.44554111IPR001471AP2/ERF domain
CDDcd000182.11E-2954113No hitNo description
PRINTSPR003674.8E-95566IPR001471AP2/ERF domain
PRINTSPR003674.8E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEHQFKHHYF TTTFPHSFDH DHATTPEKPP NTNKNTTKTP KSATATASAT TTTRYRGVRR  60
RPWGRYAAEI RDPQSKERRW LGTYDTAEEA ACAYDYAARA MRGNKARTNF TYTTSHSHLP  120
SHDDQYDHEV IMYPPPLPPF FSNSSSKKKS QPSIKTKTTT TSPNSNHSHP YPTFVEWLNS  180
DQNSHNNNHH AMINCCGEGN LVGFTETPAP ASQRNTTIPL SSSMPHHHCE HHDDDDKNNN  240
DGMMMEFFPS EPSETSGLLE EIIEKYFPKR KSTNNLNHCE QSSVVSDHHD DDDVNNKKNV  300
NYGLYYDGNN SHYHHFSGYG GEYNTMPFHG DMLPAGGTNY QVVELPQYQY NHEPMMLDDD  360
DHRHLDGVFQ YNELYNMFAA PRGAKCLGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1955110359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682509.10.0PREDICTED: ethylene-responsive transcription factor ESR2
TrEMBLA0A0K9QZ011e-108A0A0K9QZ01_SPIOL; Uncharacterized protein
STRINGXP_010682509.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-13ERF family protein