PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_121060_wnjc.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 30071.2 Da PI: 4.8575 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 126 | 175 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f++aeeAa a+++a+ +++g Bv5_121060_wnjc.t1 126 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDSAEEAAMAYDQAAFSMRG 175 9*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.48E-23 | 125 | 185 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-38 | 125 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-30 | 125 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 125 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-14 | 126 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.44E-30 | 126 | 184 | No hit | No description |
PRINTS | PR00367 | 1.0E-10 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MDTSFYSSFS TCQTQNYYHS SHHQNHLQST TPAESDSSCS AGSSSESFPW DDFWSSYNSV 60 SLPQLPINID DSDEIALFNM LSEQEMQGTT RVKIEPTSPA STNSCSTSTF SQVDVGPIEE 120 EEKRAYRGVR RRPWGKYAAE IRDSTRNGVR VWLGTFDSAE EAAMAYDQAA FSMRGTMAVL 180 NFPVEVVRES LKEMKREDEF EENSENCSTS PVIALKRKHL MKRKSMGLSA RKRERRDKNQ 240 ATSSTAATMV VFEDLGSDYL EQLLSCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-29 | 122 | 185 | 11 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679245.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 2e-59 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A0K9RNZ0 | 1e-91 | A0A0K9RNZ0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679245.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-43 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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