PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_079030_auno.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YB
Protein Properties Length: 242aa    MW: 27847.6 Da    PI: 6.9611
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_079030_auno.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.31.4e-5545140297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdrflPianv+rimkkv+P+ +kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk+yl+kyr+
  Bv4_079030_auno.t1  45 KEQDRFLPIANVGRIMKKVIPNTGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVNPLKLYLNKYRD 135
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Bv4_079030_auno.t1 136 IEGEK 140
                         **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-5338177IPR009072Histone-fold
SuperFamilySSF471131.3E-4047177IPR009072Histone-fold
PfamPF008081.0E-2750114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-197896No hitNo description
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-1997115No hitNo description
PRINTSPR006152.2E-19116134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEDESHQIKQ ESLESPCSKN KSYNNNNNNN NNNNANNNNN NASNKEQDRF LPIANVGRIM  60
KKVIPNTGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDI IWAITTLGFE  120
DYVNPLKLYL NKYRDIEGEK VNVPKQQRSA EQLHQLPQQQ QQHAQNHQRL LHHHQQDHHQ  180
FHQQVDQGLS PYATSVYSSA NTLLLPQPSF PGPEQPYPLP FSPNSIQKNY QHQEQIDSVG  240
HW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4543135294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4543135294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674594.11e-180PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotQ9SIT91e-68NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A0K9RBG32e-95A0A0K9RBG3_SPIOL; Uncharacterized protein
STRINGXP_010674594.11e-180(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.14e-67nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]