PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_048080_hfrw.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARR-B
Protein Properties Length: 649aa    MW: 71274 Da    PI: 6.1415
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_048080_hfrw.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.8e-29191244155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Bv3_048080_hfrw.t2 191 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 244
                         79*******************.********************************8 PP
2Response_reg75.22.5e-25151231109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ + +l+++l+  +y ev+ +  +e al +l+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a +++  + + 
  Bv3_048080_hfrw.t2  15 VLVVDDDPTCLTILEKMLRTCRY-EVTKTNRAEVALSWLRENRngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKGVVMKG 103
                         89*********************.***************99999***********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+ +e+l +
  Bv3_048080_hfrw.t2 104 VTHGACDYLIKPVRIEALKN 123
                         ****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1741638IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.2E-4112152No hitNo description
SuperFamilySSF521722.13E-3412135IPR011006CheY-like superfamily
SMARTSM004481.2E-2813125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.59214129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2215123IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.66E-2516128No hitNo description
PROSITE profilePS5129411.048188247IPR017930Myb domain
SuperFamilySSF466893.05E-20188248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-30190249IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-25191244IPR006447Myb domain, plants
PfamPF002499.2E-8193243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MADSSGDQFP VGLRVLVVDD DPTCLTILEK MLRTCRYEVT KTNRAEVALS WLRENRNGFD  60
IVISDVHMPD MDGFKLLEHV GLEMDLPVIM MSADDSKGVV MKGVTHGACD YLIKPVRIEA  120
LKNIWQHVVR KKKNEYRDVE QSGSWDEGDR QLKQDDAVSS PANEGNWKNA KRKSGEDDES  180
EDKDDTTTLK KPRVVWSVEL HQQFVAAVNQ LGIDKAVPKK ILELMNVPGL TRENVASHLQ  240
KYRLYLRRLS GVSQHQGGLN NSFMPQDPSF STITQLGGID LQTLAATGQL SAQTLAAYTR  300
LPPTIKPGMS MPFVDQRNLF SFENSKLRYG EGQQSQISNA NKQMNLLHGI PTTMEPKQLA  360
GMNQSAQTLG SMNMQATASS SHQNSSLLMH PMVPQQSRGH ISNESVSSQV SRIQPSIGQP  420
LHSNGTASAV LSRNSMGYDP VSQAGPVVDF SVNQISELPG NGFPLGSTPG MTSISSKGFN  480
QEEVSSDIKV TRGFVGSYDL FSELQHKSQD WQLQNPNMSY AGSSQHVTSI QNGVNVAPSI  540
MVNQSYVPAQ KNEQNGHAMS GKLMYSTGLE NQHVGMQNMN HNLNSVLAHS SSRVKAESVS  600
DVVNPGANLF SEPYGQEDLM SALLKQQEGI GSGEFDFDGY TLDNIPVNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22187250164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670915.10.0PREDICTED: two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0K9RPY90.0A0A0K9RPY9_SPIOL; Two-component response regulator
STRINGXP_010670914.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]