PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_029460_xgxs.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 407aa MW: 45503.3 Da PI: 6.9885

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_029460_xgxs.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	247	266	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Bv2_029460_xgxs.t1 247 FSCPLCSKTFNRYNNLQMHM 266 89*****************9 PP
2	zf-C2H2	14.8	8.4e-05	331	353	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F k + ++H +++ Bv2_029460_xgxs.t1 331 FMCRKCGKAFAVKGDWRTHEKNC 353 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.36E-5	241	269	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-5	247	266	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.783	247	274	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.049	247	269	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	249	269	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.37E-6	316	361	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-6	327	351	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	50	331	351	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.787	331	351	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	357	380	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MFTKWFNFIP LHHPDPYLFD TTTTSAAASN NSNSNSNSNN NNTPPPGNVG LDLNSSITNE 60 VIFNNTNYHH YHPFSSHSSP EKEALPLINT LIEPTRSDHY QHHHYHHRRH GKHQLQEQQM 120 IITHGKNNTQ SPNFSTNSTT DDDESLTVAL HIGLPTQPSY ADADVDQIED GSSADMASGV 180 VYPSSDAEAD ADADADADAD DGHPLPIKLP SLGRTTETQI EVQVQGEGGL QYWIPTPSQI 240 LIGPTQFSCP LCSKTFNRYN NLQMHMWGHG SQYRRGPESL KGTQPTPMLR IPCYCCAPGC 300 KHNIEHPRSR PLKDFRTLQT HYKRKHGVKP FMCRKCGKAF AVKGDWRTHE KNCGRVWYCV 360 CGSDFKHKRS LKDHIKAFGH GHFAFGATHG LGECFDDPHA SDADSNL

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MFTKWFNFIP LHHPDPYLFD TTTTSAAASN NSNSNSNSNN NNTPPPGNVG LDLNSSITNE  60
VIFNNTNYHH YHPFSSHSSP EKEALPLINT LIEPTRSDHY QHHHYHHRRH GKHQLQEQQM  120
IITHGKNNTQ SPNFSTNSTT DDDESLTVAL HIGLPTQPSY ADADVDQIED GSSADMASGV  180
VYPSSDAEAD ADADADADAD DGHPLPIKLP SLGRTTETQI EVQVQGEGGL QYWIPTPSQI  240
LIGPTQFSCP LCSKTFNRYN NLQMHMWGHG SQYRRGPESL KGTQPTPMLR IPCYCCAPGC  300
KHNIEHPRSR PLKDFRTLQT HYKRKHGVKP FMCRKCGKAF AVKGDWRTHE KNCGRVWYCV  360
CGSDFKHKRS LKDHIKAFGH GHFAFGATHG LGECFDDPHA SDADSNL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695304.1	0.0	PREDICTED: zinc finger protein WIP5-like isoform X1
Swissprot	Q9SVY1	1e-107	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0K9R1Q0	1e-149	A0A0K9R1Q0_SPIOL; Uncharacterized protein
STRING	XP_010695304.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-102	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]