PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv1_006280_gdiw.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26102.9 Da PI: 9.4697 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.5 | 1.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda v++i++s+++k++ey+s Bv1_006280_gdiw.t1 9 KKIENQTNRQVTYSKRRNGLFKKANELTVLCDATVSIIMVSNSNKIHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 83.4 | 5e-28 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 yqk ++++++ ++++++qqel kL++ +++Lqr +R+++G++Le+L+l+eL L q++++s++ iR++K++ l +qi++++kk ++ +e + Bv1_006280_gdiw.t1 71 YQKDKKVDVWMKQYQKMQQELMKLNETNRELQRDIRRRMGDCLEDLTLNELCCLGQEVNNSVTVIRERKMKKLDSQIDTTKKKLRNSSEVH 161 78889999*********************************************************************************** PP K-box 92 kaLrkkle 99 k+L ++++ Bv1_006280_gdiw.t1 162 KNLLSQFD 169 ***99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.501 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.84E-38 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-34 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.7E-17 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.503 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KANELTVLCD ATVSIIMVSN SNKIHEYISP 60 GNTTKEIYDR YQKDKKVDVW MKQYQKMQQE LMKLNETNRE LQRDIRRRMG DCLEDLTLNE 120 LCCLGQEVNN SVTVIRERKM KKLDSQIDTT KKKLRNSSEV HKNLLSQFDL PKEEPQYGLV 180 DNGEYNHVLG YNDDSRILAL RLQPCQPLLH GSAGSGSCLT TYTLL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 2e-14 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM076602 | 3e-36 | KM076602.1 Chenopodium album clone 1 APETALA3 (AP3) gene, partial cds. | |||
GenBank | KM076603 | 3e-36 | KM076603.1 Chenopodium album clone 2 APETALA3 (AP3) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672335.1 | 1e-167 | PREDICTED: floral homeotic protein DEFICIENS isoform X1 | ||||
Swissprot | P23706 | 2e-92 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A089VRN4 | 1e-119 | A0A089VRN4_CHEAL; APETALA3 (Fragment) | ||||
STRING | XP_010672335.1 | 1e-166 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-84 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|