PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G019700.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 319aa    MW: 34860.9 Da    PI: 9.3299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G019700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.2e-53131421129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhP+d+el+++yL++kv+gk  ++  +  + +vd++kvePwdLp +++ + kewyfFs rd+kyatg+r+nrat sgyWkatgkd
  Brast10G019700.2.p  13 LPPGFRFHPRDDELICDYLAPKVTGKVgFSGRRPpMVDVDLNKVEPWDLPVAASVGGKEWYFFSLRDRKYATGQRTNRATVSGYWKATGKD 103
                         79************************986665656***************8888899********************************** PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         + v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyrle
  Brast10G019700.2.p 104 RVVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRLE 142
                         *9999.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-593165IPR003441NAC domain
PROSITE profilePS5100555.69613165IPR003441NAC domain
PfamPF023651.2E-2714141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSMSFLSMVE GELPPGFRFH PRDDELICDY LAPKVTGKVG FSGRRPPMVD VDLNKVEPWD  60
LPVAASVGGK EWYFFSLRDR KYATGQRTNR ATVSGYWKAT GKDRVVARRG ALVGMRKTLV  120
FYQGRAPKGR KTEWVMHEYR LEGAHEQASK FTSKEDWVLC RVICKKKLAV GATSKPRNLT  180
TIGHGTSTDT SSPPLPPLMD TTLAQLHATM NNTSATAAAA ATLEQVPCFS SFNNNSASNS  240
STAQPCYLPM VTGNNGMNYM DHGLPDFGSY LDPASMNCDK KVLKAVLSQL SSMGGEVMPS  300
LLPPEMAASV SSSWMNHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49916611169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G019700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577546.10.0NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE63e-86NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0Q3GYD20.0A0A0Q3GYD2_BRADI; Uncharacterized protein
STRINGBRADI4G02060.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.29e-78NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]