PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast10G019700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 34989 Da PI: 9.3299 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.3e-53 | 13 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhP+d+el+++yL++kv+gk ++ + + +vd++kvePwdLp +++ + kewyfFs rd+kyatg+r+nrat sgyWkatgkd Brast10G019700.1.p 13 LPPGFRFHPRDDELICDYLAPKVTGKVgFSGRRPpMVDVDLNKVEPWDLPVAASVGGKEWYFFSLRDRKYATGQRTNRATVSGYWKATGKD 103 79************************986665656***************8888899********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyrle Brast10G019700.1.p 104 RVVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRLE 142 *9999.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-59 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.876 | 13 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 14 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MSMSFLSMVE GELPPGFRFH PRDDELICDY LAPKVTGKVG FSGRRPPMVD VDLNKVEPWD 60 LPVAASVGGK EWYFFSLRDR KYATGQRTNR ATVSGYWKAT GKDRVVARRG ALVGMRKTLV 120 FYQGRAPKGR KTEWVMHEYR LEGAHEQASK FTSKQEDWVL CRVICKKKLA VGATSKPRNL 180 TTIGHGTSTD TSSPPLPPLM DTTLAQLHAT MNNTSATAAA AATLEQVPCF SSFNNNSASN 240 SSTAQPCYLP MVTGNNGMNY MDHGLPDFGS YLDPASMNCD KKVLKAVLSQ LSSMGGEVMP 300 SLLPPEMAAS VSSSWMNHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-50 | 9 | 167 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast10G019700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237041.1 | 0.0 | NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 2e-86 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0Q3GYD2 | 0.0 | A0A0Q3GYD2_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G02060.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10022 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 6e-78 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast10G019700.1.p |