PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G017900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 879aa    MW: 94949.3 Da    PI: 6.6663
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G017900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.6e-1847104457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           ++t+eq+e+Le+++ ++++ps  +r+++ + +    +++ +q+kvWFqNrR +ek+
  Brast10G017900.1.p  47 YVRYTPEQVEALERVYTECPKPSSLRRQQIIRDCpilcNIEPKQIKVWFQNRRCREKQ 104
                         6789****************************************************97 PP
2START174.37.7e-551984052204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+
  Brast10G017900.1.p 198 IAEETLAEFLSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGngGT 287
                         68999*****************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++s++Rae+lpSg+li+p+++g+s +++v+hvdl+++++
  Brast10G017900.1.p 288 IELIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPSFIRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSV 378
                         **************999****************************9999999*************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s  + ++kt+ a+l++ +
  Brast10G017900.1.p 379 PEVLRPLYESPKILAQKTTIAALRHIR 405
                         **********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.0341105IPR001356Homeobox domain
SMARTSM003892.6E-1443109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-1845111IPR009057Homeodomain-like
SuperFamilySSF466891.2E-1545107IPR009057Homeodomain-like
CDDcd000862.79E-1546106No hitNo description
PfamPF000461.3E-1547104IPR001356Homeobox domain
CDDcd146867.26E-698137No hitNo description
PROSITE profilePS5084826.784188388IPR002913START domain
CDDcd088753.23E-70192408No hitNo description
Gene3DG3DSA:3.30.530.201.1E-23196380IPR023393START-like domain
SMARTSM002347.9E-47197407IPR002913START domain
SuperFamilySSF559616.59E-38198408No hitNo description
PfamPF018521.4E-52198405IPR002913START domain
PfamPF086701.2E-46733877IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MTRQRPWPPP LPPPPSLPAA AIHGGGGGGM ARLSPGAGAP QVDTGKYVRY TPEQVEALER  60
VYTECPKPSS LRRQQIIRDC PILCNIEPKQ IKVWFQNRRC REKQRKESSR MQTVNRKLTA  120
MNKLLMEEND RLQKQVSRLV YENMSAKSLK TQLRNASAAT TDTSCESVVT SGQHHQQQNP  180
AALRPQRDAN NPAGLLAIAE ETLAEFLSKA TGTAVEWVQM VGMKPGPDSI GIIAVSHNCS  240
GVAARACGLV SLEPTKVAEI LKDRPSWYRD CRCVDILHVI PTGNGGTIEL IYMQTYAPTT  300
LAAPRDFWTL RYTSGLEDGS LVICERSLTQ STGGPSGPNT PSFIRAEVLP SGYLIRPCEG  360
GGSMIHIVDH VDLDAWSVPE VLRPLYESPK ILAQKTTIAA LRHIRQIAHE SSGEIPYGAG  420
RQPAVLRTFS QRLSRGFNDA VSGFPDDGWS LLSSDGSEDI TITVNSSPNK LAGSHVSPSP  480
LFSAIGGGIL CAKASMLLQN VPPALLVRFL REHRSEWADP GVDAYSAASL RASPYAVPGL  540
RAGGFMGSQV ILPLAHTLEH EEFLEVLRLE GHGFSHDEVL LARDMYLLQL CSGVDENAAG  600
ACAQLVFAPI DESFADDAPL LPSGFRVIPL DTKADVPSAT RTLDLASALE VGSGGALRGS  660
SDASGTCNTR SVLTIAFQFS FENHLRESVA AMARQYVRAV MASVQRVAMA IAPSRLGSQI  720
ELKHPPGSPE ALTLASWIGK SYSAHTGAEI RWSNTEDADS PLMLLWNHSD AILCCSLKAA  780
PMFTFGNNAA LDMLETTLVN LQDISLEAIL DDEGRKALCA DFSKIMQQGF AYLPAGVCKS  840
SMGRQASYEQ AVAWKVLSDD VAGAPHCLAF MFVNWTFL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G017900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599100.0AK359910.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1106F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577453.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A0Q3EHP90.0A0A0Q3EHP9_BRADI; Uncharacterized protein
STRINGBRADI4G01887.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]