PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G252000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 415aa    MW: 44368.4 Da    PI: 10.5557
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G252000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.22.2e-1885176276
            trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                         Wt +e+l+Li+a+r +++r   g                  +++++W++v ++++++g+ rs++qC++kw+nl ++ykk+++  ++ +s+s
  Brast09G252000.1.p  85 WTLHETLVLITAKRLDDDRRAGGGigisapssssspattprSAEQRWKWVENYCWAHGCLRSQNQCNDKWDNLLRDYKKVRDFHSRLASNS 175
                         **************777666655344455556666677777*****************************************999876555 PP

            trihelix  76 s 76 
                         s
  Brast09G252000.1.p 176 S 176
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.72577158IPR017877Myb-like domain
PfamPF138373.6E-1184167No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSASPDPGTP SSSSAPAGLL RTHPHHHQHH HNLHLSTPPP QPPAAASPQL AMTPHQQALA  60
PACAAPPPSP ASASPASRDY RKGNWTLHET LVLITAKRLD DDRRAGGGIG ISAPSSSSSP  120
ATTPRSAEQR WKWVENYCWA HGCLRSQNQC NDKWDNLLRD YKKVRDFHSR LASNSSVVPS  180
GSGAAAAPLP APTSSYWAME RHERKERNLP TNLAPEVHDA LCDVLSRRAA RRGGAAVAPS  240
PAPPLPPTSP PKPLLSQQQQ HRPTAPHPPL LQLPPPPPVS VAPAPATTSV SEDEMTTGSS  300
SDSGSSSGRG EPEAKRQRRR QGRGRASEDG RLGSSVVRGA TVLARTLAAC EEKRERRHRE  360
LLELEERRLR LDAERADARR QGFAGLMSAV HSLSAAIHAL VSDHAHGRSG DSSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G252000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751247.11e-117trihelix transcription factor ASR3
TrEMBLI1J3761e-116I1J376_BRADI; Uncharacterized protein
STRINGBRADI5G25700.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-36Trihelix family protein