PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G162700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 363aa    MW: 38234.7 Da    PI: 5.6912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G162700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-19169220256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t  eAa+a+++a+ +++g+
  Brast09G162700.1.p 169 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFRMRGA 220
                         8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-32168228IPR001471AP2/ERF domain
CDDcd000181.75E-29169228No hitNo description
SuperFamilySSF541714.05E-22169228IPR016177DNA-binding domain
SMARTSM003801.8E-36169233IPR001471AP2/ERF domain
PfamPF008473.6E-14169219IPR001471AP2/ERF domain
PROSITE profilePS5103224.144169227IPR001471AP2/ERF domain
PRINTSPR003672.3E-13170181IPR001471AP2/ERF domain
PRINTSPR003672.3E-13209229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDFAGEMDDF ALEIIREHLL GGDVSTATTT TAVPETAAAA SNHEFPVLQQ PPSAAYLQPA  60
APAMSSSFFP QEEPQGRPYA YTDITQEYVN SCPAAPQAGA DMGEAIAFRA PEPVMIKFGG  120
EPSPVAAARA PPSSLTISLP PGGRSSFVWP PRAHQAAAAA AADCQDFRKY RGVRQRPWGK  180
FAAEIRDPKR RGSRVWLGTY DTSVEAARAY DRAAFRMRGA KAILNFPNEV GTRGAELWAP  240
PAPTSQAAAA PGNKRKRSQD HQEECYPEVE VVGVAGLNKA VKTEAAASPS ADTTHSSVSR  300
ETSTGTACSA VTSAATSSEG GFPMTPSSSG WEQYWEALLG GMPLLSPLSP HPALGFPQLT  360
VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26168232468ATERF1
3gcc_A1e-26168232468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G162700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126122e-84CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581490.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLI1J0A31e-179I1J0A3_BRADI; Uncharacterized protein
STRINGBRADI5G17490.11e-180(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ethylene responsive element binding factor 5