PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast09G119200.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38281 Da PI: 5.1746 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.4 | 4.4e-30 | 35 | 179 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+P+d el+ +L++kv + ++++ i+e+ +i++++P++Lp +k + ++ yfF++ +++y gkrk+r+ Brast09G119200.5.p 35 LPAGVKFDPSDLELL-THLEAKVGLGNsashilIDEFIPtIQEMeGICYTHPENLP-GIKIDGTNSYFFHTISNAYDVGKRKRRKvvnsdh 123 799************.89****988875666654443444999988**********.6777899********************7577777 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 + +W++tgk++++ + +g ++g kk+Lv+y g+++kg kt+W+mh+y+l Brast09G119200.5.p 124 tvrDEPIRWHKTGKSRSISE-NGVVKGWKKILVLYIGSKKKGAdidKTNWTMHQYHL 179 65433567**********99.99************88888886666*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-33 | 27 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.897 | 35 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-13 | 36 | 179 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MLPLEIEKLV AEAWRECPNC KYRIDNDVSS KWPGLPAGVK FDPSDLELLT HLEAKVGLGN 60 SASHILIDEF IPTIQEMEGI CYTHPENLPG IKIDGTNSYF FHTISNAYDV GKRKRRKVVN 120 SDHTVRDEPI RWHKTGKSRS ISENGVVKGW KKILVLYIGS KKKGADIDKT NWTMHQYHLG 180 VEEDEKHGEL VVSKIFWQLR SNKTRKSQMY AVDEECDSVA GEIDPTTPMT NPPQPRRLNS 240 SPCKTEQNEE EDEEYGLLLT GTSQAINDVA TLPGLAEHPL SNGTHTCPKN APLPLDMDAL 300 HGFSDFDKDL FNLPDNPFGS QDSLSWLDLD NKHTEEKEF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 111 | 116 | KRKRRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast09G119200.5.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581357.2 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-69 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | I1IYV3 | 0.0 | I1IYV3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G13450.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 5e-72 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast09G119200.5.p |