PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G119200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 346aa    MW: 38919 Da    PI: 6.0554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G119200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.34.5e-30562001128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp+G++F+P+d el+  +L++kv   +      ++++   i+e+ +i++++P++Lp  +k + ++ yfF++ +++y  gkrk+r+      
  Brast09G119200.2.p  56 LPAGVKFDPSDLELL-THLEAKVGLGNsashilIDEFIPtIQEMeGICYTHPENLP-GIKIDGTNSYFFHTISNAYDVGKRKRRKvvnsdh 144
                         799************.89****988875666654443444999988**********.6777899********************7577777 PP

                 NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                             +  +W++tgk++++ + +g ++g kk+Lv+y g+++kg    kt+W+mh+y+l
  Brast09G119200.2.p 145 tvrDEPIRWHKTGKSRSISE-NGVVKGWKKILVLYIGSKKKGAdidKTNWTMHQYHL 200
                         65433567**********99.99************88888886666*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3348219IPR003441NAC domain
PROSITE profilePS5100527.89756219IPR003441NAC domain
PfamPF023656.7E-1357200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAESLIITWK TIATIISKST NMLPLEIEKL VAEAWRECPN CKYRIDNDVS SKWPGLPAGV  60
KFDPSDLELL THLEAKVGLG NSASHILIDE FIPTIQEMEG ICYTHPENLP GIKIDGTNSY  120
FFHTISNAYD VGKRKRRKVV NSDHTVRDEP IRWHKTGKSR SISENGVVKG WKKILVLYIG  180
SKKKGADIDK TNWTMHQYHL GVEEDEKHGE LVVSKIFWQL RSNKTRKSQM YAVDEECDSV  240
AGEIDPTTPM TNPPQPRRLN SSPCKTEQNE AINDVATLPG LAEHPLSNGT HTCPKNAPLP  300
LDMDALHGFS DFDKDLFNLP DNPFGSQDSL SWLDLDNKHT EEKEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G119200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581357.20.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLI1IYV30.0I1IYV3_BRADI; Uncharacterized protein
STRINGBRADI5G13450.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-72NAC family protein