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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G148900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18332.5 Da PI: 5.4289 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.2e-20 | 38 | 86 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +grW+AeIrdp++ +r++lg++ taeeAa+a++ a++ ++g Brast08G148900.1.p 38 YRGIRRRP-WGRWAAEIRDPRK---GTRVWLGTYATAEEAARAYDVAARDIRG 86 9*******.**********954...4**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-23 | 37 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-14 | 37 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 37 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.869 | 37 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 37 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 38 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-29 | 38 | 94 | No hit | No description |
PRINTS | PR00367 | 1.7E-11 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MCGGAVIADF VPDGSSTSLT GEELTTEKPP APGRKTAYRG IRRRPWGRWA AEIRDPRKGT 60 RVWLGTYATA EEAARAYDVA ARDIRGSKAK LNFPPAVDDA AGAAVEGSKK RRMKVAAVES 120 SASSSPLSAT SAGGAEKLRE CMSGLEAFLE LENPAGDGDD VERWQAVDLM FE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-22 | 38 | 102 | 15 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 113 | KKRRMK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G148900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568621.1 | 1e-90 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 7e-34 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | I1HK81 | 3e-89 | I1HK81_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G27920.1 | 4e-90 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast08G148900.1.p |