PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G098400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 484aa    MW: 54252.9 Da    PI: 4.4428
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G098400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.5e-33581971128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                         lp+G++F+P+d+el+++ L+k+ ++       ++++   ++e  +i++++P++Lp  +k++ +  +fF+++ k+y+tg+rk+r ++     
  Brast07G098400.1.p  58 LPKGVKFDPSDQELLSHLLAKHDKAGAephpfIDEFIPtVEEDdGICYTHPQQLP-GLKQDGSVSHFFHRTYKAYNTGTRKRRRINtsdla 147
                         799************988877644444555443332322444435**********.667788899******************64434555 PP

                 NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+k+v++ +g++ g+kk++v+y  + +  k++kt+Wvmh+y+l
  Brast07G098400.1.p 148 DVRWHKTGKTKPVIV-DGKHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 197
                         889************.999***********6644666777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-3743216IPR003441NAC domain
PROSITE profilePS5100531.91258216IPR003441NAC domain
PfamPF023657.1E-1559197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MTGTSWIIDS QRIASKIKNV SGSLDLSKQK WVSNPTKECP RCNHIIDNTD VVHQWPGLPK  60
GVKFDPSDQE LLSHLLAKHD KAGAEPHPFI DEFIPTVEED DGICYTHPQQ LPGLKQDGSV  120
SHFFHRTYKA YNTGTRKRRR INTSDLADVR WHKTGKTKPV IVDGKHLGCK KIMVLYMSTV  180
KGGKPKKTNW VMHQYHLGTG EDEQNGEYVV SKLFFQQQFK PGEKNAQELT TADALETIAA  240
EADLPDLPEP ALDEQGEEEH TSSITNQEVL HNNEHTADWE ALPYKQQFKS GEKNAQELTT  300
ADALETIAAE EDLPDLPEPA LDEQEEHISS ITDQEVLHNN DHIADREALP YQESRNCEIT  360
MEEKAAEEDA AYPSSGKPED GDNPSSQDPK WWDGESQFLL TSQQLAETLP CLDEFLQSQT  420
SGDEQDTIKP KLADYAKLPV EDLKQDLEKC QELGFSDADF RLSQIEFSQD SCTAAWAGGN  480
MLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139RKRRR
2136140KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G098400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7291471e-113KP729147.1 Stipa purpurea microsatellite ZH4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227769.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLI1GZ500.0I1GZ50_BRADI; Uncharacterized protein
STRINGBRADI1G43840.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-130NAC family protein