PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G078800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 352aa    MW: 37647.9 Da    PI: 7.3004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G078800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-19178227255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f++a++Aa a+++a+ +l+g
  Brast07G078800.1.p 178 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDSAQDAALAYDKAAFRLRG 227
                         59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-35178241IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21178236IPR016177DNA-binding domain
PROSITE profilePS5103222.708178235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-31178236IPR001471AP2/ERF domain
CDDcd000182.90E-31179237No hitNo description
PfamPF008471.6E-12179227IPR001471AP2/ERF domain
PRINTSPR003676.0E-10179190IPR001471AP2/ERF domain
PRINTSPR003676.0E-10201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAAIDLYNTR NQFSSSSSSS SSDQELMKAL EPFIRSASSP TSSTSASSPF SNFPHCYSSL  60
SSLPQESYYF PASSSSYTAL QAPFAAPPTT TTTSFSQLPP LPPTSHYTSS APPAVYPPVN  120
DDELVGLASL GPEQIHQIQA QLFLQQQQRG GCLSLSASLL GPRVQPMKQQ QAQSQSKLYR  180
GVRQRHWGKW VAEIRLPKNR TRLWLGTFDS AQDAALAYDK AAFRLRGDAA RLNFPDLRRG  240
GAHLAGPLHA SVDAKLTSIC HTIAAAAKPS KPKPSSGSPK ASASSTTAST EGDESSSSAL  300
SAGPTTPLPP PQPSLPEMAS LDFTEAPWDE SDAFHLHKLP SWEIDWDSIL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21174235163ATERF1
3gcc_A3e-21174235163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G078800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650401e-113AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564067.11e-141ethylene-responsive transcription factor RAP2-4
TrEMBLI1GZN21e-140I1GZN2_BRADI; Uncharacterized protein
STRINGBRADI1G45470.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-37related to AP2 4