PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G031900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 225aa    MW: 23924.2 Da    PI: 4.5573
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G031900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173687155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr++   grWv+e+r+p   +k+ r++lg+f +ae Aa+a++ a+++l+g
  Brast07G031900.1.p 36 PVYRGVRRRGAAGRWVCEVREP---NKKSRIWLGTFASAEAAARAHDVAALALRG 87
                        68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-133687IPR001471AP2/ERF domain
PROSITE profilePS5103222.3263795IPR001471AP2/ERF domain
SMARTSM003802.2E-2537101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-293797IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-203797IPR016177DNA-binding domain
PRINTSPR003672.8E-53849IPR001471AP2/ERF domain
PRINTSPR003672.8E-56177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDHYEDDCGG GGYATVTSAP PKRPAGRTKF RETRHPVYRG VRRRGAAGRW VCEVREPNKK  60
SRIWLGTFAS AEAAARAHDV AALALRGRAA CLNFADSASL LAVDPATLRT PEDIRAAAIR  120
LAEATCPSSS SSEAMSAAAQ AAPAPGMMML QEEEEEAAAE QYDEYAAMCA SMGDLQDQHS  180
YFYGDIGGDW QQQQSSSQFD GDDDGSNGGG CYGYGAGDVT LWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G031900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0287521e-112EF028752.1 Triticum aestivum CBFII-5.1 mRNA, complete cds.
GenBankJN9872141e-112JN987214.1 Triticum aestivum AP2 domain CBF protein (CBFII) gene, CBFII-5.1b allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564337.12e-94dehydration-responsive element-binding protein 1C
SwissprotA2Y8S64e-58DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C
SwissprotQ9LWV34e-58DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C
TrEMBLI1H1454e-93I1H145_BRADI; Uncharacterized protein
STRINGBRADI1G49560.18e-94(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-23dehydration response element B1A
Publications ? help Back to Top
  1. Kim SJ, et al.
    Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.
    Mol. Cells, 2009. 27(4): p. 449-58
    [PMID:19390826]
  2. Kim MJ, et al.
    Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.
    BMC Mol. Biol., 2009. 10: p. 91
    [PMID:19761621]
  3. Kim MJ, et al.
    Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
    Methods Mol. Biol., 2012. 786: p. 65-77
    [PMID:21938620]
  4. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  5. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]