PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G015400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 393aa    MW: 42352.2 Da    PI: 7.8755
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G015400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.8e-1577136155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Brast07G015400.1.p  77 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 136
                         789******************888855566447*************************98 PP
2AP252.41.3e-16179230155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Brast07G015400.1.p 179 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 230
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-1277136IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1677145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-1578144IPR001471AP2/ERF domain
PROSITE profilePS5103219.4878144IPR001471AP2/ERF domain
SMARTSM003807.7E-2578150IPR001471AP2/ERF domain
PRINTSPR003672.8E-57990IPR001471AP2/ERF domain
PfamPF008474.9E-12179230IPR001471AP2/ERF domain
CDDcd000182.62E-23179240No hitNo description
SuperFamilySSF541716.47E-18179240IPR016177DNA-binding domain
PROSITE profilePS5103218.953180238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18180239IPR001471AP2/ERF domain
SMARTSM003801.6E-26180244IPR001471AP2/ERF domain
PRINTSPR003672.8E-5220240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEAYCSSLVK DELINGGGGA AAGGMRYCEA APPVATKSLK RRKREPPAVS GLTTTVSGGG  60
KDGDKSAGNA AAAKRSSRFR GVSRHRWTGR FEAHLWDKGT WNPTQKKKGK QVYLGAYNEE  120
EAAARAYDLA ALKYWGPTTY TNFPVVDYEK ELKVMQGVSR EEYLASIRRK SNGFSRGVSK  180
YRGVARHHHN GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYRG INAVTNFDLS  240
SYIRWLKPNT AINTDAELPT SAAALLTPAP TMRVPRLLPP LATAGSCVFG GPSPSPSPSP  300
TTTSALSLLL RSSLFQELVA QQKPAAAVDS DDGIGDQAAV SDEAERGEEE NESSSFGEAL  360
YGGGEGEAAF SCSMYELDDS FAHIEDSLWG CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642KSLKRRK
2102110PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G015400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0599897e-94EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313164.10.0ethylene-responsive transcription factor WRI1
TrEMBLA0A0Q3S3T50.0A0A0Q3S3T5_BRADI; Uncharacterized protein
STRINGTraes_7AS_A70A185F1.11e-167(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-80AP2 family protein