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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G133300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 18726.3 Da PI: 10.8394 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.5 | 6.2e-22 | 13 | 60 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ++s+rqvtfskRr g++KKA+EL+ LC+a+ a+++fs+ g+ + + Brast06G133300.1.p 13 PIGDTSRRQVTFSKRRSGLFKKASELCALCGADLALVVFSPAGRAFAF 60 5889**************************************987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.203 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.5E-27 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-25 | 5 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-19 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-23 | 14 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-19 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-19 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MATRGRQRIE IRPIGDTSRR QVTFSKRRSG LFKKASELCA LCGADLALVV FSPAGRAFAF 60 GNPSVDHVLG RHGGAPPLLV LDERAERDAA AATRTELEEA KARVGAEQAR LGAVEEKVRL 120 AMAGRRFYWE ADVEALGEAE LREFARALIR LRDDVRRREN ALLSQSNNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 8e-16 | 5 | 72 | 2 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G133300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469339 | 1e-114 | KF469339.1 Brachypodium distachyon MADS-box transcription factor 45 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288318.1 | 5e-83 | agamous-like MADS-box protein AGL61-like | ||||
TrEMBL | A0A0Q3KYP4 | 2e-81 | A0A0Q3KYP4_BRADI; Uncharacterized protein | ||||
TrEMBL | I1GUH5 | 1e-81 | I1GUH5_BRADI; MADS-box transcription factor 45 | ||||
STRING | BRADI1G27900.1 | 2e-82 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-28 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G133300.1.p |