PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G257800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 352aa    MW: 36528.1 Da    PI: 5.399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G257800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19172221255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ ae Aa+a++aa++ ++g
  Brast05G257800.1.p 172 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDDAEAAARAYDAAALGFRG 221
                         8********.**********7.....337**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.46E-18171231No hitNo description
PROSITE profilePS5103224.987172229IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-22172231IPR016177DNA-binding domain
SMARTSM003801.7E-35172235IPR001471AP2/ERF domain
PfamPF008479.7E-12172221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-32172231IPR001471AP2/ERF domain
PRINTSPR003677.3E-11173184IPR001471AP2/ERF domain
PRINTSPR003677.3E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MCCGAAEVAD PGSDDHHRRR RLAGAGDGGD EPATLTTSST AMMWRRRQAH EMSAMVSALA  60
SVVAGAETAM SSSSSTKRPA VEQLIDDAEE AWWSPLPAAY GGQLAGGAPS LPSVSPTFLA  120
DYTAEVTAPT AQQQQQHSSS SSAAALAAAA AAGDEELPSP SSGGGGSTSR KRYRGVRQRP  180
WGKWAAEIRD PHKAARVWLG TFDDAEAAAR AYDAAALGFR GSRAKLNFPE SASLLLPQQN  240
PQPPLPAMPP PQRPEALLES QATWGDQSYS HYASFLQGGG DQSAAPPPLL YSFGSGASYA  300
LQPETSGTGY PAAADSPSTA AAWSAAYGLN DDPRRRRPPA PRREDDGPPS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21171229463ATERF1
3gcc_A5e-21171229463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G257800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620617e-75AK362061.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238677.21e-116ethylene-responsive transcription factor ABR1
TrEMBLA0A0Q3EXB71e-114A0A0Q3EXB7_BRADI; Uncharacterized protein
STRINGORUFI12G04720.18e-63(Oryza rufipogon)
STRINGTraes_5BL_60FC12DA6.26e-63(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.14e-24related to AP2 6