PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G007900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 376aa MW: 39856.4 Da PI: 4.3377

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G007900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.3	1.9e-16	18	139	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyat..gkrknratksgyWkatgk 88 G+rFhPt ee ++ yL++ ++g++ +++ +i+++ +y++ P dL +++ ++++ yf+s+ ++ + g r +ra++ W + Brast05G007900.1.p 18 FGLRFHPTAEEAISVYLRRWIAGDPaPDAAGIIHHAAVYSLPPADLAAAFPRlpRTHDRYFYSTCRRVPIRggGYRVSRAVAGVSWGSNT- 107 79*********************5555667**********85333333566889999998876642378**999999664. PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +k+v ++ +ge g +tL + ktdW+m+e++ Brast05G007900.1.p 108 NKPVEDAmTGEXLGFVETLKYG--------KTDWLMEEFH 139 4777774466667777777765........9********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.22E-20	12	145	IPR003441	NAC domain
PROSITE profile	PS51005	17.724	16	163	IPR003441	NAC domain
Pfam	PF02365	2.2E-9	19	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MAAPLPSTVL SPIAALSFGL RFHPTAEEAI SVYLRRWIAG DPAPDAAGII HHAAVYSLPP 60 ADLAAAFPRL PRTHDRYFYS TCRRVPIRGG GYRVSRAVAG VSWGSNTNKP VEDAMTGEXL 120 GFVETLKYGK TDWLMEEFHR LPEDAAADGA AERQAAMADA QQRMPPSSPR NRRVMALPVL 180 PEPAPVKKRA APVAEPPRPK KRTRAAAPAA SPVMASPPAP PAVPRVALRQ LPRPSWCPPP 240 PAGLLALEPR RPAPAVASAA ZXSPAAAAAH DELVALVLSG VEEEDDSAAG QEDDDDQDLG 300 DFASALETDL ETTEEDGGGD AGSRSLEGLA ADERGDDDIA MDMDDVFNDL GDEEDDGDGA 360 WKSIPLSDYT DLQYS*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MAAPLPSTVL SPIAALSFGL RFHPTAEEAI SVYLRRWIAG DPAPDAAGII HHAAVYSLPP  60
ADLAAAFPRL PRTHDRYFYS TCRRVPIRGG GYRVSRAVAG VSWGSNTNKP VEDAMTGEXL  120
GFVETLKYGK TDWLMEEFHR LPEDAAADGA AERQAAMADA QQRMPPSSPR NRRVMALPVL  180
PEPAPVKKRA APVAEPPRPK KRTRAAAPAA SPVMASPPAP PAVPRVALRQ LPRPSWCPPP  240
PAGLLALEPR RPAPAVASAA ZXSPAAAAAH DELVALVLSG VEEEDDSAAG QEDDDDQDLG  300
DFASALETDL ETTEEDGGGD AGSRSLEGLA ADERGDDDIA MDMDDVFNDL GDEEDDGDGA  360
WKSIPLSDYT DLQYS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	172	RMPPSSPRNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G007900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239312.1	1e-123	uncharacterized protein LOC104585070
TrEMBL	A0A0Q3EQ52	1e-120	A0A0Q3EQ52_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22621	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	9e-12	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	Brast05G007900.1.p