PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G249800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 455aa    MW: 47744.6 Da    PI: 8.2907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G249800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12252294552
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                         h + ErrRR+r+N++f+ Lr llP+       K++Ka++L  + eY++
  Brast04G249800.2.p 252 HMISERRRRERLNESFQALRALLPPG-----SKNDKATVLANTLEYMN 294
                         8899********************95.....5**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-16249319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14251315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9252294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-11253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-4262296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQMAAFMGCE SGEIEVGVSS TTAAAPSLRA SVEQVFSEDF FQQSLLEELL QLPPTRPSSS  60
SSSLPSISVG SPAADGASTS LPRSMTTTTM TMAMAASSAT PSPRAPSLAQ PLFSRHGAHG  120
HGHGHAQRHF PSAEADDAAM AQAMLAVISA SSPSSSSPMP APGCRGERRG SGTRTAFRAY  180
DAALAPRRAP GAAGQRMIKR GISILRRMHV IKRGYSQNQD QQRTAVLQRR LEEEQEEAAG  240
TAPAPTSSQL HHMISERRRR ERLNESFQAL RALLPPGSKN DKATVLANTL EYMNILIAQI  300
SDLESKNRAL EAAAAAQVYR PIVNGSSSRE RRPADQALVQ QGLLVEVATN SSAGASTSST  360
PVSREVTIRV AAPGTGDLSE LVTRVLRLLK ETGHGFTVVA VDASRHPAAG GIAQASMTLR  420
ATAAAGELDE ASLREAVAKA VEGLVTPSDD DESP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G249800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316466.10.0putative transcription factor bHLH041 isoform X3
TrEMBLA0A2K2CVY20.0A0A2K2CVY2_BRADI; Uncharacterized protein
STRINGBRADI3G08280.11e-180(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-18bHLH family protein