PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G020900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 310aa    MW: 32905.6 Da    PI: 8.1949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G020900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-19148197255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa a+++a+ +l+g
  Brast04G020900.1.p 148 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDAAEDAALAYDKAAFRLRG 197
                         59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.66E-30147207No hitNo description
SuperFamilySSF541717.19E-22148206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-32148206IPR001471AP2/ERF domain
PROSITE profilePS5103222.813148205IPR001471AP2/ERF domain
SMARTSM003803.0E-36148211IPR001471AP2/ERF domain
PRINTSPR003673.0E-10149160IPR001471AP2/ERF domain
PfamPF008473.3E-12149197IPR001471AP2/ERF domain
PRINTSPR003673.0E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAAAIDMYKY NSTHQITSAS DQQELMKALE PFIRSASSNP YNYYYPSSSS MSQDSSSYMT  60
APSPYASFAT SPVPTAAASS PLYSSAAANG PIGLTHLGPA QIQQIQAQFI LQQQQQRGSF  120
LGPRGTTAMK QSGSPPPLAM VGGAQSKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDA  180
AEDAALAYDK AAFRLRGDQA RLNFPALRRG GAHLAGPLHA SVDAKLTAIC QSLNNPDAAG  240
ANSAAGPDSP KCSASASTDN DSASAAGSPG APAPGMEKLD FSEAPWDESE SFHLRKYPSV  300
EIDWDSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22144205163ATERF1
3gcc_A3e-22144205163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G020900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1058771e-116AK105877.1 Oryza sativa Japonica Group cDNA clone:001-204-C05, full insert sequence.
GenBankAK1059911e-116AK105991.1 Oryza sativa Japonica Group cDNA clone:001-205-H01, full insert sequence.
GenBankAK2421211e-116AK242121.1 Oryza sativa Japonica Group cDNA, clone: J075147D24, full insert sequence.
GenBankAP0041191e-116AP004119.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1288_G09.
GenBankAP0149581e-116AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-116CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570628.11e-146ethylene-responsive transcription factor RAP2-4
TrEMBLI1IF541e-144I1IF54_BRADI; Uncharacterized protein
STRINGBRADI3G58980.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-43ERF family protein