PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G310400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 229aa    MW: 24457.2 Da    PI: 8.3134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G310400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-1681128555
                 AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         GVr ++ +g+++AeIrd + ng  +r++lg+f+t++ Aa a+++a+ + +g
  Brast03G310400.1.p  81 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFDTPQAAALAYDQAAFAVRG 128
                         9*****.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.08778136IPR001471AP2/ERF domain
PRINTSPR003671.7E-77990IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2079137IPR016177DNA-binding domain
PfamPF008478.5E-1280128IPR001471AP2/ERF domain
CDDcd000186.82E-1281112No hitNo description
SMARTSM003806.8E-2981142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2781137IPR001471AP2/ERF domain
PRINTSPR003671.7E-7102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGPANPNPVE YYDYYEHSYS FSSSSDHPHA GNDEQLLVME SASSGSSSSS NNSSAHSPAC  60
TASKTGLDLP WSSSPAPALI GVRKRPWGKY AAEIRDSTRN GARVWLGTFD TPQAAALAYD  120
QAAFAVRGAA AVLNFPVARV QDSLRALGIG IGIGIKEGDS PALALKRRHC IRKRTPKQRT  180
AGGMDRTSCS EKRRRKQQQP AASASACVLE LEDLGTDYLE ELLTLSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-24811361772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196EKRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G310400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276831e-57KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316328.11e-69ethylene-responsive transcription factor ERF094
TrEMBLK4A2J12e-62K4A2J1_SETIT; Uncharacterized protein
STRINGSi033089m3e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-29ethylene response factor 1