PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G310300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 275aa    MW: 29582.8 Da    PI: 5.1413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G310300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-17123171455
                 AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          GVr ++ +g+++AeIrd + ng  +r++lg+f+t+  Aa a+++a+++l+g
  Brast03G310300.1.p 123 IGVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFDTPHAAALAYDQAALALRG 171
                         6******.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-12121171IPR001471AP2/ERF domain
PROSITE profilePS5103221.364121179IPR001471AP2/ERF domain
PRINTSPR003674.1E-7122133IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-21122180IPR016177DNA-binding domain
CDDcd000183.80E-15124180No hitNo description
SMARTSM003803.0E-32124185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-27124179IPR001471AP2/ERF domain
PRINTSPR003674.1E-7145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEPPQYYDEY SNYYVYNDHQ VAYTDQPLEY PNSSMAASFQ HQQQLHFGGA IDGHASYDVD  60
HFTALMGAAS ISTPHPPASD AAAGSGCRRY CSWEQQLEEP AMTMMAASTA AEEERSSSTP  120
DLIGVRKRPW GKYAAEIRDS TRNGARVWLG TFDTPHAAAL AYDQAALALR GPAAVLNFPV  180
GRVQDSLDGL GLIGAGAGAG GEDSSPALAL KRRHCIRKRN PKQNSGRMPA AARRQNREKL  240
QEAAAAASSA AACVLELEDL GEDYLQDLLA FCDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-231241791772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G310300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236388.12e-85ethylene-responsive transcription factor 2
TrEMBLA0A0Q3F5234e-84A0A0Q3F523_BRADI; Uncharacterized protein
STRINGEMT295153e-62(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-25ethylene response factor 1