PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G224300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 275aa    MW: 29235.8 Da    PI: 9.2625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G224300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1999148255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa  +++a+ +l+g
  Brast03G224300.1.p  99 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAVVYDQAAYRLRG 148
                         59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-3098158No hitNo description
SMARTSM003802.0E-3499162IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2299158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-3199158IPR001471AP2/ERF domain
PROSITE profilePS5103222.81399156IPR001471AP2/ERF domain
PfamPF008472.2E-12100148IPR001471AP2/ERF domain
PRINTSPR003671.3E-10100111IPR001471AP2/ERF domain
PRINTSPR003671.3E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAAAIDRPAD LKIRDAPAPQ MQMLQQPPFH PSLPPPFPNG GAHGYHYMGS AQGQLSPAQI  60
QYIQARLRLP PQTGLAPRAQ PMKAAAALKP APAPAQQKLY RGVRQRHWGK WVAEIRLPRN  120
RTRLWLGTFD TAEEAAVVYD QAAYRLRGDA ARLNFPDNAA SRGPLDAAVD AKLQAISHTI  180
AAKSASSKKA SNGGSKATPI NAPAAVAAAS GNCSSGNSGG SAMDDGSETT SSGSPMAEME  240
QLNFGEVPWD ESESFMLTKY PSYEIDWDSL LSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1995156163ATERF1
3gcc_A1e-1995156163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G224300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574464.11e-144ethylene-responsive transcription factor RAP2-13
TrEMBLI1I6Y11e-143I1I6Y1_BRADI; Uncharacterized protein
STRINGBRADI3G35560.11e-144(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-45related to AP2 4