PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G205400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 349aa    MW: 37679.7 Da    PI: 5.4595
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G205400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.6e-5261341128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd+elv +yLk++v++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd
  Brast03G205400.1.p   6 LPPGFRFHPTDDELVGYYLKRRVDNLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFVPRDRKYPNGSRTNRATTTGYWKATGKD 95 
                         79****************************.99**************95334445667********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v + +g++ g++ktLvfy+grap ge+tdWvmheyrl
  Brast03G205400.1.p  96 RKVSCDGGAVCGVRKTLVFYRGRAPGGERTDWVMHEYRL 134
                         *************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-593157IPR003441NAC domain
PROSITE profilePS5100557.2086158IPR003441NAC domain
PfamPF023653.0E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGTMTLPPGF RFHPTDDELV GYYLKRRVDN LKIELEVIPV IDLYKFEPWE LPEKSFLPKR  60
DLEWFFFVPR DRKYPNGSRT NRATTTGYWK ATGKDRKVSC DGGAVCGVRK TLVFYRGRAP  120
GGERTDWVMH EYRLCQDLSL HGASVFLGAY ALCRVVKRSE AGLINGDAAA KAMVPAAAGK  180
GARMSKVASS SSLVTADHQQ PSNGSSPFTP SPPRLDIIGG GGTESWRDMA PAPLCFPPQQ  240
EDASFFVGGA GDLLFPSAAG ECDPFIFGDI GGSGGALIPE NELRWDNFPC TNNAFPATGF  300
MPSAGAGELW NPAPPNAGGA PLLCRQASDG IDDLTAWFSP VDENMVVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-51116212169NO APICAL MERISTEM PROTEIN
1ut4_B6e-51116212169NO APICAL MERISTEM PROTEIN
1ut7_A6e-51116212169NO APICAL MERISTEM PROTEIN
1ut7_B6e-51116212169NO APICAL MERISTEM PROTEIN
3swm_A6e-51116215172NAC domain-containing protein 19
3swm_B6e-51116215172NAC domain-containing protein 19
3swm_C6e-51116215172NAC domain-containing protein 19
3swm_D6e-51116215172NAC domain-containing protein 19
3swp_A6e-51116215172NAC domain-containing protein 19
3swp_B6e-51116215172NAC domain-containing protein 19
3swp_C6e-51116215172NAC domain-containing protein 19
3swp_D6e-51116215172NAC domain-containing protein 19
4dul_A6e-51116212169NAC domain-containing protein 19
4dul_B6e-51116212169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G205400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689851e-127AK368985.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2083F05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235019.20.0NAC domain-containing protein 72
TrEMBLA0A0Q3FE610.0A0A0Q3FE61_BRADI; Uncharacterized protein
STRINGBRADI3G33957.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-81NAC domain containing protein 71