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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G334600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 354aa MW: 38211.3 Da PI: 4.5329 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.4e-20 | 122 | 172 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAa+ ++ a+ kl+g Brast01G334600.1.p 122 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAARVYDSAAVKLRG 172 689*******.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.4E-12 | 122 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.35E-30 | 122 | 182 | No hit | No description |
PROSITE profile | PS51032 | 23.538 | 123 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 123 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 123 | 181 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-35 | 123 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MWPMEEEFYM PVKRTEHVEV TSRVVAASSP ASAKAKGKYP KTVRVFCDDN DATDSSSDEE 60 PAPERRRVKR YVQELRLEPA APAKARTAED AAPAPAAAMA AAAKALAPAR KRKAGADAAG 120 SPRFRGVRRR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA RVYDSAAVKL RGPDATVNFQ 180 QSEDGDMDVP PEVAERLPQP PGSKNASSSA TSYDSCEESH VAAASPTSVL RCSFPPSALS 240 AAAGEENNTS KKPSPSSRSF ETDESSGVFG CSFPNNGFAG ELPPLFTDFD LLSDFAEPPM 300 DFLSNLPEEP FAFSGDSSPD FRLDPPSPAA LQQADEFFED ITDLFQIDPL PAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 123 | 179 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G334600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565510.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A0Q3FVD4 | 0.0 | A0A0Q3FVD4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G07357.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-35 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G334600.1.p |