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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G288400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 563aa MW: 59113.8 Da PI: 7.5632 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 288 | 346 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+ Brast01G288400.1.p 288 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 346 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 272 | 348 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 280 | 348 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.471 | 282 | 348 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 287 | 347 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 289 | 346 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MELRPKQREH RRHEEDEEEA EMERGHLSLR TGGRRHDEEV GWRRRGEIKE VDFFLASGDA 60 DAARSRKDVA GHGALHSGRD DVHTGLDLLT TTTGAAAGAA TAAGGEDPAA LVARTAKNHE 120 MEAAATVQGE LRRVVEENLR LRGMLEELTR SYGALYHQLL QVTHQQQHPH RHTDLAMNNR 180 SPLTQTHLTA ANTSATQQFL EPRPRAPIST TMGTAQQDDA AVEYDSGTAS SPSLSGAGNG 240 GGKRRTVQDD AAAAPGTRES SEQASPEQPP CRKPRVSVRA RSEAPMISDG CQWRKYGQKM 300 AKGNPCPRAY YRCTMATGCP VRKQVQRCAE DKTVLITTYE GNHNHQLPPA ATTMANTTSA 360 AAAMLLSGPA TSRDGPIGPL LGHPTAASLF HPAHHQYSFP YASSMATLSA SAPFPTITLD 420 LTQPPPSAGL HRPPPPAASM PLPPQLAMYL QQRATMLPPG LSAGAQSVMD TVTAAIAADP 480 NFSTALAAAI SSVMARSEAP HHQDQPSTTA TATPRGGVSA AGDGTGAALA APTVSATDGA 540 RAASGGGGSP RLATQSCTTS TA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-22 | 278 | 348 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-22 | 278 | 348 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G288400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243275 | 1e-49 | AK243275.1 Oryza sativa Japonica Group cDNA, clone: J100050A06, full insert sequence. | |||
GenBank | AP002480 | 1e-49 | AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05. | |||
GenBank | AP014957 | 1e-49 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-49 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010233067.1 | 0.0 | probable WRKY transcription factor 47 | ||||
TrEMBL | A0A0Q3JZT4 | 0.0 | A0A0Q3JZT4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G11170.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 7e-64 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G288400.1.p |