PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G280000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 198aa    MW: 21552.3 Da    PI: 6.531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G280000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-1952102256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Brast01G280000.1.p  52 RYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 102
                         7********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.64552109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3252110IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2252110IPR016177DNA-binding domain
CDDcd000181.13E-1652110No hitNo description
PfamPF008478.4E-1352101IPR001471AP2/ERF domain
SMARTSM003804.0E-3652115IPR001471AP2/ERF domain
PRINTSPR003673.6E-115364IPR001471AP2/ERF domain
PRINTSPR003673.6E-117591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MCGGAIIYDC VPAPRRVSAA DFWPDADDSD AHSTAPHKEY AAPRAKRERR NRYRGIRQRP  60
WGKWAAEIRD PVKGVRVWLG TYPTAEAAAR AYDRAARRIR GAKAKVNFPN EELLLASSPA  120
TAAAAPPAVL SSLKKEEDAE FRCVACSGEA KELSEELMAY ESYMSFLGVP YMQGGDVAAP  180
AAEEAPAPAA LWSFEDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2253109663ATERF1
3gcc_A4e-2253109663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G280000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0944081e-102FP094408.1 Phyllostachys edulis cDNA clone: bphylf025f05, full insert sequence.
GenBankFP1003901e-102FP100390.1 Phyllostachys edulis cDNA clone: bphylf045j15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567604.14e-92ethylene-responsive transcription factor ERF071
TrEMBLI1HEY19e-91I1HEY1_BRADI; Uncharacterized protein
STRINGBRADI2G11890.11e-91(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-26ERF family protein