PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G195700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 299aa    MW: 31644.6 Da    PI: 4.2252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G195700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-2098149156
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g+
  Brast01G195700.1.p  98 TKFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDSAAIQLRGA 149
                         69********.**********88.....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-2998158No hitNo description
PfamPF008471.9E-1298148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2999156IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2199157IPR016177DNA-binding domain
SMARTSM003802.6E-3599162IPR001471AP2/ERF domain
PROSITE profilePS5103222.99899156IPR001471AP2/ERF domain
PRINTSPR003672.0E-10100111IPR001471AP2/ERF domain
PRINTSPR003672.0E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDVTDSS GEEEGCGGAR RVARMVRELP PAPAPAPAVL LQAGFTAAGF  60
PEQCILGEDD DRARPVGCTT APRKRSAKGG GSAAAAGTKF RGVRRRPWGK YAAEIRDPWR  120
GVRVWLGTFD TAEEAARVYD SAAIQLRGAS ATTNFSASGN SSEGAQDPAA TGYESGAESS  180
QAVSSPTSVL RKVPSMSSLA EDRDDSEAYQ GDGGSSLAVL EELGEFVPFE DAPVYSSSGF  240
WDFEPQAGFL YAEPSSPDEA SWGDASAGEP WAAPVQDSND YFQDLRDLFP LNPPPAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2288165381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G195700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-177HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569485.11e-168pathogenesis-related genes transcriptional activator PTI6
TrEMBLI1HQ111e-167I1HQ11_BRADI; Uncharacterized protein
STRINGBRADI2G45530.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-29cytokinin response factor 4