PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G165800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 298aa    MW: 33583.6 Da    PI: 6.5148
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G165800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.6e-1675126155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t++eAa+a++ a+ +++g
  Brast01G165800.2.p  75 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTEQEAARAYDIAAIEYRG 126
                         89****99**********99966...3.6**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.891140IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-10341IPR016177DNA-binding domain
SMARTSM003806.7E-4446IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-9541IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1775135IPR016177DNA-binding domain
PfamPF008479.4E-1275126IPR001471AP2/ERF domain
CDDcd000182.39E-2575134No hitNo description
SMARTSM003801.2E-2476140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1776134IPR001471AP2/ERF domain
PROSITE profilePS5103218.76976134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MFFNEKTVYL GAYDEEEAAA MAYDLAALKY WGPTTYTNFP VMNYEKELKI METLTKEEYL  60
ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYSTE QEAARAYDIA  120
AIEYRGINAV TNFDLRSYIT WLKPSVSDSP NVAGLAMPIP TENLFPRDTH IFSQHNPFIL  180
DHNTTQGSEE ATISPNFPRT RASSTALSLL FKSSMFRQLV EENSDATNKI RGNVREPVSK  240
PEANEHHSFF HGGTPDVLCL FSPTGVCNNS LELQESIPYS GNHEIVTWNG LPSMPEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G165800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808866.11e-117AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2DEM50.0A0A2K2DEM5_BRADI; Uncharacterized protein
STRINGBRADI2G48130.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-56AP2 family protein