PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G056900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 694aa    MW: 72914 Da    PI: 6.9409
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G056900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-11245301155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Brast01G056900.2.p 245 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 301
                         57*******************4444.2455535555.779999**************98 PP
2AP246.77.9e-15344395155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Brast01G056900.2.p 344 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 395
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-9245301IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15245311IPR016177DNA-binding domain
CDDcd000186.70E-17245311No hitNo description
Gene3DG3DSA:3.30.730.105.0E-12246309IPR001471AP2/ERF domain
PROSITE profilePS5103217.385246309IPR001471AP2/ERF domain
SMARTSM003809.3E-23246315IPR001471AP2/ERF domain
PRINTSPR003673.7E-6247258IPR001471AP2/ERF domain
PfamPF008479.8E-10344395IPR001471AP2/ERF domain
CDDcd000182.83E-22344405No hitNo description
SuperFamilySSF541711.11E-17344405IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-18345404IPR001471AP2/ERF domain
PROSITE profilePS5103219.045345403IPR001471AP2/ERF domain
SMARTSM003801.5E-33345409IPR001471AP2/ERF domain
PRINTSPR003673.7E-6385405IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MATVNNWLGF SLSPQELPSS AAAAGDVSAA DVCFNIPQDW SSMRGSELSA LVQAEPKLED  60
FLGGISSYSE HHNKARSSNM DINGAAACYA SSGYQLYQHH HHQATSANSL HFADSVMVAS  120
SAPGIHNLNH DAAANGAGNN GGIGLSMIKS WLRSQPAPGQ RAAEGLSLSM NMPLLQAAAA  180
AETSSLSTSA AAQQGSRKEN NGSTSAGSGA VVSAGTTAAA ESAGAVVESP AAGRKTADTF  240
GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW  300
GPTTTTNFPV DNYEKELEEM KHMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA  360
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILDSSAALP  420
LGGGTKRLKD AAAADHHHQQ HHPGGVVSYA AAPQLDSAAI AYGAPYYHHH QHHSSAAWPA  480
IAFQAAPQAA SSGGHGHLLY HPYGQPPLMR GWCKQEQEQG QQQEEADHAV IAAAHSLQDL  540
HHLNLGAGAG AHDFFSQHAA HAMHGLGSVD NNNGAAAASL EHSTGSNSVV YNGDATTNNN  600
SYMLPPMSAA AAAAGFSIRD QQDDGGKMAY ESFLLGAPGD GYGGGTGRMA AAWITPVSVS  660
AAQPVAATSS GSDMAGAVCH GGAQLFSVWN DDA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G056900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753602.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ8LSN21e-128BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2K2DGH00.0A0A2K2DGH0_BRADI; Uncharacterized protein
STRINGBRADI2G57747.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-116AP2 family protein