PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G056900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 715aa    MW: 75031.4 Da    PI: 6.9994
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G056900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11266322155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Brast01G056900.1.p 266 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 322
                         57*******************4444.2455535555.779999**************98 PP
2AP246.68.2e-15365416155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Brast01G056900.1.p 365 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 416
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.50E-17266332No hitNo description
PfamPF008475.3E-9266322IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15266332IPR016177DNA-binding domain
PROSITE profilePS5103217.385267330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-12267330IPR001471AP2/ERF domain
SMARTSM003809.3E-23267336IPR001471AP2/ERF domain
PRINTSPR003673.9E-6268279IPR001471AP2/ERF domain
CDDcd000182.33E-22365426No hitNo description
SuperFamilySSF541711.11E-17365426IPR016177DNA-binding domain
PfamPF008471.0E-9365416IPR001471AP2/ERF domain
PROSITE profilePS5103219.045366424IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18366425IPR001471AP2/ERF domain
SMARTSM003801.5E-33366430IPR001471AP2/ERF domain
PRINTSPR003673.9E-6406426IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MAGRRGSVSS SGVQLIIDQS SMATVNNWLG FSLSPQELPS SAAAAGDVSA ADVCFNIPQD  60
WSSMRGSELS ALVQAEPKLE DFLGGISSYS EHHNKARSSN MDINGAAACY ASSGYQLYQH  120
HHHQATSANS LHFADSVMVA SSAPGIHNLN HDAAANGAGN NGGIGLSMIK SWLRSQPAPG  180
QRAAEGLSLS MNMPLLQAAA AAETSSLSTS AAAQQGSRKE NNGSTSAGSG AVVSAGTTAA  240
AESAGAVVES PAAGRKTADT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ  300
GGYDKEEKAA RAYDLAALKY WGPTTTTNFP VDNYEKELEE MKHMTRQEFV ASLRRKSSGF  360
SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV  420
TNFDMSRYDV KSILDSSAAL PLGGGTKRLK DAAAADHHHQ QHHPGGVVSY AAAPQLDSAA  480
IAYGAPYYHH HQHHSSAAWP AIAFQAAPQA ASSGGHGHLL YHPYGQPPLM RGWCKQEQEQ  540
GQQQEEADHA VIAAAHSLQD LHHLNLGAGA GAHDFFSQHA AHAMHGLGSV DNNNGAAAAS  600
LEHSTGSNSV VYNGDATTNN NSYMLPPMSA AAAAAGFSIR DQQDDGGKMA YESFLLGAPG  660
DGYGGGTGRM AAAWITPVSV SAAQPVAATS SGSDMAGAVC HGGAQLFSVW NDDA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G056900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753602.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ8LSN21e-128BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2K2DGH00.0A0A2K2DGH0_BRADI; Uncharacterized protein
STRINGBRADI2G57747.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-116AP2 family protein