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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi5g25700.1.p |
Common Name | BRADI_5g25700, LOC104581460 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
Trihelix |
Protein Properties |
Length: 412aa MW: 44260.5 Da PI: 10.5306 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi5g25700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 56.5 | 7.2e-18 | 80 | 170 | 2 | 75 |
trihelix 2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
Wt +e+l+Li+a+r +++r g +++++W++v ++++++g+ rs++qC++kw+nl ++ykk+++ ++ +s+s
Bradi5g25700.1.p 80 WTLHETLVLITAKRLDDDRRAGGGvagssssspagpsalprSAEQRWKWVENYCWSQGCLRSQNQCNDKWDNLLRDYKKVRDFHNRLASNS 170
**************777777654344456677778888888*****************************************999875544 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MSASPDPSPS SSTPAGHLRT HPYPHHHNLH LSTPPPPQPH PPAAPGPLAV TPPHQQALAP 60 YSAPPPSPAS TPRDYRKGNW TLHETLVLIT AKRLDDDRRA GGGVAGSSSS SPAGPSALPR 120 SAEQRWKWVE NYCWSQGCLR SQNQCNDKWD NLLRDYKKVR DFHNRLASNS TAPSGSGAAP 180 AAAAPLPTSY WAMERHERKE RNLPTNLAAE VYDALCDVLS RRAARRGGAP VAPSPPPPLA 240 LPAPPLHPPP KPLLSQQQQR IPPHHPPLLQ LPPPPVAVAP PPTTTSVSED EMTGSSSDSG 300 SSSGRAGGGG DEPEAKRQRR QRGRVSDRGR VGSSVVRGAT VLARTLVACE EKRERRHRER 360 LELEERRLRL EAERAEARRQ GFAGLISAVH SLSGAIHALV SDHARSGDSS R*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ827837 | 1e-76 | HQ827837.1 Oryza officinalis isolate CC Shattering4 gene locus, complete sequence. |