PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g25700.1.p | ||||||||
Common Name | BRADI_5g25700, LOC104581460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Trihelix | ||||||||
Protein Properties | Length: 412aa MW: 44260.5 Da PI: 10.5306 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.5 | 7.2e-18 | 80 | 170 | 2 | 75 |
trihelix 2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 Wt +e+l+Li+a+r +++r g +++++W++v ++++++g+ rs++qC++kw+nl ++ykk+++ ++ +s+s Bradi5g25700.1.p 80 WTLHETLVLITAKRLDDDRRAGGGvagssssspagpsalprSAEQRWKWVENYCWSQGCLRSQNQCNDKWDNLLRDYKKVRDFHNRLASNS 170 **************777777654344456677778888888*****************************************999875544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.551 | 72 | 153 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-5 | 73 | 155 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.3E-11 | 79 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MSASPDPSPS SSTPAGHLRT HPYPHHHNLH LSTPPPPQPH PPAAPGPLAV TPPHQQALAP 60 YSAPPPSPAS TPRDYRKGNW TLHETLVLIT AKRLDDDRRA GGGVAGSSSS SPAGPSALPR 120 SAEQRWKWVE NYCWSQGCLR SQNQCNDKWD NLLRDYKKVR DFHNRLASNS TAPSGSGAAP 180 AAAAPLPTSY WAMERHERKE RNLPTNLAAE VYDALCDVLS RRAARRGGAP VAPSPPPPLA 240 LPAPPLHPPP KPLLSQQQQR IPPHHPPLLQ LPPPPVAVAP PPTTTSVSED EMTGSSSDSG 300 SSSGRAGGGG DEPEAKRQRR QRGRVSDRGR VGSSVVRGAT VLARTLVACE EKRERRHRER 360 LELEERRLRL EAERAEARRQ GFAGLISAVH SLSGAIHALV SDHARSGDSS R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 315 | 321 | KRQRRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g25700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ827837 | 1e-76 | HQ827837.1 Oryza officinalis isolate CC Shattering4 gene locus, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751247.1 | 0.0 | trihelix transcription factor ASR3 | ||||
TrEMBL | I1J376 | 0.0 | I1J376_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G25700.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 | Representative plant | OGRP1881 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 6e-36 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g25700.1.p |
Entrez Gene | 104581460 |