PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g01887.1.p
Common NameBRADI_4g01887, LOC100838127
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 876aa    MW: 94854.1 Da    PI: 6.6981
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g01887.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.6e-1844101457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         ++t+eq+e+Le+++ ++++ps  +r+++ + +    +++ +q+kvWFqNrR +ek+
  Bradi4g01887.1.p  44 YVRYTPEQVEALERVYTECPKPSSLRRQQIIRDCpilcNIEPKQIKVWFQNRRCREKQ 101
                       6789****************************************************97 PP
2START173.91e-541954022204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++
  Bradi4g01887.1.p 195 IAEETLAEFLSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGngGTIE 286
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++++++a+++lv+ Rdf+++Ry+  l++g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s +++v+hvdl++++++++l
  Bradi4g01887.1.p 287 LIYMQTYAPTTLVApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVL 379
                       ***********9999****************************9999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s  + ++kt+ a+l++ +
  Bradi4g01887.1.p 380 RPLYESPKILAQKTTIAALRHIR 402
                       ******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.0338102IPR001356Homeobox domain
SMARTSM003892.6E-1440106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-1842108IPR009057Homeodomain-like
SuperFamilySSF466891.15E-1542104IPR009057Homeodomain-like
CDDcd000862.77E-1543103No hitNo description
PfamPF000461.3E-1544101IPR001356Homeobox domain
CDDcd146867.23E-695134No hitNo description
PROSITE profilePS5084827.323185385IPR002913START domain
CDDcd088757.01E-70189405No hitNo description
Gene3DG3DSA:3.30.530.201.6E-24193377IPR023393START-like domain
SMARTSM002348.9E-47194404IPR002913START domain
SuperFamilySSF559611.21E-38195405No hitNo description
PfamPF018522.0E-52195402IPR002913START domain
PfamPF086701.6E-46730874IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MTRHRPWPPP PPSSVPVAAI HSGGGGMARL SPGAGAPQVD TGKYVRYTPE QVEALERVYT  60
ECPKPSSLRR QQIIRDCPIL CNIEPKQIKV WFQNRRCREK QRKESSRMQT VNRKLTAMNK  120
LLMEENDRLQ KQVSRLVYEN MSAKSLKTQL RNASAATTDT SCESVVTSGQ HHQQQNPAAP  180
RPQRDANNPA GLLAIAEETL AEFLSKATGT AVEWVQMVGM KPGPDSIGII AVSHNCSGVA  240
ARACGLVSLE PTKVAEILKD RPSWYRDCRC VDILHVIPTG NGGTIELIYM QTYAPTTLVA  300
PRDFWTLRYT SGLEDGSLVI CERSLTQSTG GPSGPNTPNF IRAEVLPSGY LIRPCEGGGS  360
MIHIVDHVDL DAWSVPEVLR PLYESPKILA QKTTIAALRH IRQIAHESSG EIPYGAGRQP  420
AVLRTFSQRL SRGFNDAVSG FPDDGWSLLS SDGSEDITIT VNSSPNKLAG SHVSPSPLFS  480
AIGGGILCAK ASMLLQNVPP ALLVRFLREH RSEWADPGVD AYSAASLRAS PYAVPGLRAG  540
GFMGSQVILP LAHTLEHEEF LEVLRLEGHG FSHDEVLLAR DMYLLQLCSG VDENAAGACA  600
QLVFAPIDES FADDAPLLPS GFRVIPLDTK TDVPSATRTL DLASALEVGS GGALRGSSDA  660
SGTCNMRSVL TIAFQFSFEN HLRESVAAMA RQYVRAVMAS VQRVAMAIAP SRLGSQIELK  720
HPPGSPEALT LASWIGKSYS AHTGAEIRWS NTEDADSPLM LLWNHSDAIL CCSLKAAPMF  780
TFGNNAALDM LETTLVNLQD ISLEAILDDE GRKALCTDFS KIMQQGFAYL PAGVCKSSMG  840
RQASYEQAVA WKVLSDDVAG APHCLAFMFV NWTFL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g01887.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599100.0AK359910.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1106F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577453.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A0Q3EHP90.0A0A0Q3EHP9_BRADI; Uncharacterized protein
STRINGBRADI4G01887.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]