PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g07450.2.p | ||||||||
Common Name | BRADI_3g07450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22556.3 Da PI: 8.5065 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.6e-18 | 6 | 52 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ++++GVr+++ +g+Wv+eIr+p r++lg+f taeeAa+a+++a+ + Bradi3g07450.2.p 6 KKFRGVRQRH-WGSWVSEIRHP-----LLRVWLGTFETAEEAARAYDEAAVLM 52 59*******9.**********8.....7*********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.92E-30 | 6 | 64 | No hit | No description |
SMART | SM00380 | 1.5E-36 | 7 | 68 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 7 | 49 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.351 | 7 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-31 | 7 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-19 | 7 | 63 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVQPKKKFRG VRQRHWGSWV SEIRHPLLRV WLGTFETAEE AARAYDEAAV LMSGRNAKTN 60 FPVQRSSTGD PAPAAGRDVR GGNGGGSSSS SMSNLSQILS AKLRKCCKAP SPSLTCLRLD 120 PEKSHIGVWQ KRAGARADSN WVMTVELNKG VGLPSDVEAQ STISTATTSS SVSTMDDEEK 180 LTLQMIEELL SRSGPVSPSH GEDEGDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 6 | 67 | 4 | 68 | ATERF1 |
3gcc_A | 1e-16 | 6 | 67 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g07450.2.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571428.1 | 1e-127 | ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 3e-70 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0Q3HKQ6 | 1e-152 | A0A0Q3HKQ6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G07450.1 | 1e-126 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 9e-58 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g07450.2.p |