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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi2g59119.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
M-type_MADS |
Protein Properties |
Length: 216aa MW: 23620.3 Da PI: 10.6519 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi2g59119.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 79.3 | 2.6e-25 | 67 | 116 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ + rqv fskRr g++KKA+EL LCdaeva+++fs+ gklyeyss
Bradi2g59119.1.p 67 RIEDRTSRQVRFSKRRSGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 116
8***********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MSSRPSPRTG PSPPPLPSVL PSPALPGLPR KRGTERDRER SGRRCVAART EEARSVMVRR 60 GRVELRRIED RTSRQVRFSK RRSGLFKKAF ELALLCDAEV ALLVFSPAGK LYEYSSSLSI 120 EGTYDRYQQF AGAVRNTYQG GASTSNDEDP SNLQSRLREI TAWSVHNNAD NADASNLEKL 180 EKLLTDAKRA LAKQNSNRSA TGENSNGPTG EGGNA*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-16 | 60 | 117 | 2 | 59 | Myocyte-specific enhancer factor 2A |
5f28_A | 3e-16 | 60 | 117 | 3 | 60 | MEF2C |
5f28_B | 3e-16 | 60 | 117 | 3 | 60 | MEF2C |
5f28_C | 3e-16 | 60 | 117 | 3 | 60 | MEF2C |
5f28_D | 3e-16 | 60 | 117 | 3 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF469333 | 0.0 | KF469333.1 Brachypodium distachyon MADS-box transcription factor 39 mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]
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