PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g54940.1.p
Common NameBRADI_2g54940, LOC100823746
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 613aa    MW: 65524 Da    PI: 8.4116
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g54940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.5e-103934301954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Bradi2g54940.1.p 393 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 430
                       554459******************************88 PP
2BELL91.96e-30258327372
              BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +e + kk++L+s++eeV+krY+qy++q+q+vi+sFe+vag  +a+p++++Al+ +++hF+cLk +i +q+
  Bradi2g54940.1.p 258 AEQHWKKTRLISMMEEVCKRYRQYYQQVQAVIASFETVAGFSNAAPFAAMALRVMAKHFKCLKSMILNQL 327
                       57899**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.8E-34185325IPR006563POX domain
PfamPF075262.4E-37190323IPR006563POX domain
PROSITE profilePS5007112.422371434IPR001356Homeobox domain
SMARTSM003891.7E-10374438IPR001356Homeobox domain
CDDcd000861.22E-12374435No hitNo description
SuperFamilySSF466895.99E-17376441IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28377438IPR009057Homeodomain-like
PfamPF059206.5E-19391430IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MSSPAGGGYG GGAGSGAEPA HHHGHAHGHL LLQHHYAHHV AAAAAAAAGG QMYHVPQHSR  60
REKLRFPPDG AAASDSPATQ QLAPQQHGAP GAWPPPAFYS YASSSSSYSP HSPTTLPQQT  120
VPSNGLTAAP QQLPQIPAQQ NFSLSLSSAS SNPPATPRRQ PQQQLAGARG PAAPAAATGP  180
YGPFTGYATV LGRSRFLDPA QKLLEEICDV GGAGAHVDRS VPGEDLLDAD PVDVEDHDVV  240
GHELDAATDR DAGSMSGAEQ HWKKTRLISM MEEVCKRYRQ YYQQVQAVIA SFETVAGFSN  300
AAPFAAMALR VMAKHFKCLK SMILNQLRNT SKIAVKEGMS KDIVVFGLGG GGGGGAGFQR  360
GSSVNGFGQP NNIWRPQRGL PERSVSVLRA WLFEHFLHPY PTDGDKQMLA KQTGLTRNQV  420
SNWFINARVR LWKPMVEEIH NLEMKIHKRS APDKGQHGIH NLTQHSSQCS GKRSEPCDSQ  480
PGQISSITRN HHTPASHGFP DELSQMSQSI QQSQVSLAYN RLSSQHNMAS PQHQHVSGVG  540
GAGSSSVSLT LGLHQNNRVC FGEPLQSALP ANLAHRFGLE DVNDAYAMSS FAGQDRHFTK  600
DIGGHLLHDF VG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16380438563Homeobox protein Meis2
4xrm_B3e-16380438563Homeobox protein Meis2
4xrs_A2e-16380437158Homeobox protein Meis1
4xrs_B2e-16380437158Homeobox protein Meis1
5bng_A3e-16380438159Homeobox protein Meis2
5bng_B3e-16380438159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g54940.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564609.10.0BEL1-like homeodomain protein 9
TrEMBLI1HTD80.0I1HTD8_BRADI; Uncharacterized protein
STRINGBRADI2G54940.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.17e-63BEL1-like homeodomain 8