PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53070.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 299aa    MW: 32823.8 Da    PI: 5.2734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53070.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1673124155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV  ++++grW+A+I     ng rk+ +lg+fgt eeAa+a++ a+ + +g
  Bradi2g53070.3.p  73 SKYRGVAKHHQNGRWEARIGY--ANG-RKYLYLGTFGTQEEAARAYDLAAIQRRG 124
                       89****************544..366.8*********************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.219138IPR001471AP2/ERF domain
SMARTSM003800.02344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-7538IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-6539IPR016177DNA-binding domain
SuperFamilySSF541711.5E-1673133IPR016177DNA-binding domain
PfamPF008471.7E-1273124IPR001471AP2/ERF domain
CDDcd000183.15E-2173133No hitNo description
PROSITE profilePS5103217.70174132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1674132IPR001471AP2/ERF domain
SMARTSM003803.1E-2374138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MFPLVYLGSY HTEEAAARTY DLAALKYWGS HCGLLNFPVD TYKQECEKMQ RMTREEYIAS  60
LRRVSSGFTR GVSKYRGVAK HHQNGRWEAR IGYANGRKYL YLGTFGTQEE AARAYDLAAI  120
QRRGLGAVTN FDARCYTDEH LQSQPRPCSC KAEPDPEPEP EPAAAARPCP AAPLPLLQLK  180
IEPGLDDVEP AAPALRGDME REDVDRAIAE VLRALCVDRA DFEARYPPRR GGVIWTSAPD  240
DVRDLPGHVG FEDDIEGVLF DDAANAAFSV SCAAATISSL ASGRRRPASI GLGEAEWA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53070.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754135.10.0AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6PQQ35e-53AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2K2DFL70.0A0A2K2DFL7_BRADI; Uncharacterized protein
STRINGBRADI2G53070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-55AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]